Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00147 ATGACGAATCAGAGAGTGGTGATTACTGAGGCGAAATCTAAAATCGGAATGGCTTTGACGGCGGCGATGTCGAAGTCGGGTCTGATATCTCCGGCGGTGAGGGAGCCGATGGCGAGGATCGGAGAGTTGGTGGCTCTTTCTCAAAAGAAGTTCTTGAAGAAACTCGAAAATGGCGCAAGTTTTAAAGGATCATCAGGCGCTAAGGTGACTGCTTGGATCGACGCAATGAGAGATTCATCTCCAACAAAACTCAGACCCATTTCTTCTTTCTCTGAAACAACAGAGCAGAGCTCTTGGGCACTGCTTCATCCATCAGCTTTACACATGTTCGAAGAAATAACAAAAGCTTCCCAGGGGAAGCAGATAGTCATGTTTCTGGATTATGATGGGACACTCTCACCCATCGTTGAAAACCCAGATAGAGCATTCATGACCCACGAGATGAGAAAAGCAGTGAAGAATGTTGCTAGATACTTCCCTACAGCTATAGTGAGCGGAAGAAGCAGAGAAAAGGTTTACAGCTTCGTACAGTTATCAGAGCTTTACTACGCAGGCAGCCATGGAATGGACATCAAGGGACCAACCAAAACACGTAAACACATGAAGGGAAAGCAACCACTCTCCTGCCAACCAGCAATTGAATTCTTGCCCATGATTGACGAGGTGTATAAAGCTTTGTGTGAGAAAATTGCACCCATTAATGGAGCCATGGTGGAAAACAACAGATTCTGCATATCCGTGCATTTCCGCTGTGTCGATGAAAAGAATTGGGGTGCATTAGCAGAGAAAGTCAGATCGGTGGTCAATGAGTACCCAAAACTTAGGATGAGCCAAGGAAGAAAGGTTTTAGAGATTCGTCCAACCATAAAATGGGACAAGGGGAAAGCACTTGAGTTCTTGCTGGAATCACTTGGGTTTGGAAATTCTAAAGATGTTTTGCCCGTTTACATCGGAGATGATCGGACCGACGAAGACGCGTTCGAGGTTTTGAGGAGTAGGAAACTAGGGTTTGGCATTCTTGTTTCAAAAAGTCCAAAGGAAACAAGGGCTTCTCACACATTGCAAGAACCATCCGAGGTTAAGGAATTTTTGTCTCGATTGGTCGAATGGAGACTGCAACAACATTCGTCACACAAGGCGAAGGCAGTAGAGATTGAATCACATATCATACCTAACAAATTTCCAAACCCTACAAAATTTAATGTAGGACGGAAGATTTTATGTATTACTGTTTTTTTCTTTTTATTAAAAAATGTAATTGAGCAAGAAATGAGAAAATCTCTCTCTACGAGCTTGTGA 1299 43.49 MTNQRVVITEAKSKIGMALTAAMSKSGLISPAVREPMARIGELVALSQKKFLKKLENGASFKGSSGAKVTAWIDAMRDSSPTKLRPISSFSETTEQSSWALLHPSALHMFEEITKASQGKQIVMFLDYDGTLSPIVENPDRAFMTHEMRKAVKNVARYFPTAIVSGRSREKVYSFVQLSELYYAGSHGMDIKGPTKTRKHMKGKQPLSCQPAIEFLPMIDEVYKALCEKIAPINGAMVENNRFCISVHFRCVDEKNWGALAEKVRSVVNEYPKLRMSQGRKVLEIRPTIKWDKGKALEFLLESLGFGNSKDVLPVYIGDDRTDEDAFEVLRSRKLGFGILVSKSPKETRASHTLQEPSEVKEFLSRLVEWRLQQHSSHKAKAVEIESHIIPNKFPNPTKFNVGRKILCITVFFFLLKNVIEQEMRKSLSTSL 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1294571 1297837 - Bma014603.1 Bma02g00147 77397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00147 432 TIGRFAM T6PP: trehalose-phosphatase 120 368 IPR003337 GO:0003824|GO:0005992
Bma02g00147 432 CDD HAD_TPP 123 360 - -
Bma02g00147 432 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 45 376 - -
Bma02g00147 432 Gene3D - 122 216 IPR023214 -
Bma02g00147 432 Gene3D - 219 383 IPR023214 -
Bma02g00147 432 SUPERFAMILY HAD-like 123 370 IPR036412 -
Bma02g00147 432 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 124 331 IPR006379 -
Bma02g00147 432 Pfam Trehalose-phosphatase 125 357 IPR003337 GO:0003824|GO:0005992
Bma02g00147 432 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 45 376 IPR044651 GO:0004805|GO:0005992
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00147 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - pvy:116131529 496.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00147 Bma-Chr2:1294571 Bma09g00036 Bma-Chr9:790261 4.03E-170 dispersed
Bma14g01998 Bma-Chr14:43290266 Bma02g00147 Bma-Chr2:1294571 1.71E-90 transposed
Bma15g01035 Bma-Chr15:41460465 Bma02g00147 Bma-Chr2:1294571 3.34E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g389 . . Bda01g00879 . . . . . Cmo05g00514 . . . . . Sed04g0134 . . Bhi04g00748 Tan02g2378 Cmetu03g2140 . Hepe10g0513 . Lcy13g1576 Cla08g01098 Cam08g1552 Cec08g1125 Cco08g1252 Clacu08g1254 . Cre08g1036 . . Cone17ag1228 Cone20ag0499 . . . Cme03g01512 Blo17g00124 Blo18g00136 . Bda13g01408 Bpe02g01116 Bpe14g00448 . Bma02g00147 . . . . Cma05g00491 Car05g00440 . Cpe11g00430 . . . . . . . . . . . . . . . Lsi08g00955 . Chy03g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000449 7 3 6 4 6 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 4 3 10 12 1 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00147 Bma_Chr02 FPKM 11.741846 15.448894 1.103157 0.728175 0.0 0.0 0.0 1.969271 1.374298 1.066963