Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00148 ATGGTTGGGAATGTGATGGAAATGAAGGCGAACATCGGGAAGGTGCCCTTGTTGAGTGATGATTTCGATCTGATAGCTGCCGTTGCGGAGCCGCTGCCCCCTGTGGTTGAAACCGACTTGTGTGACGGAGGAGCTGAGGAGGATAAGACGGGAAGGAAGGAGATGGTTCTTGGAAGAAACGTGCACACCACGTGTCTTGCCGTTACCGAGCCAGAGGCTAATGACGAGTTTACCGGTGACAAGGAGGCTTTTATGGCCGGTGTGCTGGCTCGGTACAGGAAGACTCTGATCGAGAGGACCAAGCATCATTTAGGTTACCCGTACAATTTGGACTTCGATTATGGGGCTTTGGGCCAGTTGCAGCATTTCTCTATCAACAATCTTGGGGATCCGTTTATCGAAAGTAACTATGGTGTGCATTCCAGGCAATTTGAAGTAGGTGTTTTGGATTGGTTTGCACGCCTTTGGGAGATAGAGAAAAATGAGTATTGGGGTTACATAACCAATTGTGGGACCGAAGGTAATCTTCATGGGATATTAGTCGGGAGGGAAGTTTTACCTGATGGGATTCTTTATGCGTCAAGAGAATCTCATTATTCTGTTTTCAAAGCTGCTAGAATGTATAGAATGGAATGTGTCAAAGTGGGAACTCTGGTCTCTGGAGAGATTGATTGCACTGATTTTAAAGCTAAACTGAGTGCTAACAAAGAGAAACCAGCCATTATCAATGTTAATATAGGAACGACGGTGAAAGGAGCCGTCGACAACCTTGATCTCGTGATACAGACTCTAGAGGAATGTGGATTCACGAAGGATCGGTTTTATATTCACTGTGATGGAGCTTTGTTTGGACTTATGATGCCTTTCGTCAAGCGTGTACCGAAGGTTACTTTCAAAAAGCCAATTGGAAGTGTTAGTGTTTCTGGCCACAAATTTGTTGGATGTCCTATGCCTTGTGGTGTCCAAATGACACGGTTGGAGCACATAAATGCACTGTCAAGGAACGTTGAGTATCTTGCCTCAAGAGATGCTACTATCATGGGAAGTCGAAATGGCCATGCTCCAATCTTCCTTTGGTACACCCTCAACAGAAAAGGGTACAAAGGGTTCCAAAAGGAAGTACAAAAGTGTCTCAGAAATGCACATTACCTTAAAGACCGCCTCAGAGGGGCTGGAATCAGTGCCATGCTGAACGAGCTTAGCAGCACAGTCGTGTTTGAACGACCCATTGATGAGGAGTTCGTTCGAAAGTGGCAATTAGCTTGTCAGGGAAATATTGCCCATGTTGTGGTCATGCCCAATGTCACCATTGAAAAGTTGGATGATTTTTTGAGTGATCTAATCGAGAAAAGATCAACATGGTATCAGGATGAGAAGACCAAGCCTCCTTGTGTTGCAGAAGAGATAGGAGCTGAGAATTGTTCTTGCCTGAATCACAAGTAA 1443 45.18 MVGNVMEMKANIGKVPLLSDDFDLIAAVAEPLPPVVETDLCDGGAEEDKTGRKEMVLGRNVHTTCLAVTEPEANDEFTGDKEAFMAGVLARYRKTLIERTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVLPDGILYASRESHYSVFKAARMYRMECVKVGTLVSGEIDCTDFKAKLSANKEKPAIINVNIGTTVKGAVDNLDLVIQTLEECGFTKDRFYIHCDGALFGLMMPFVKRVPKVTFKKPIGSVSVSGHKFVGCPMPCGVQMTRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLRGAGISAMLNELSSTVVFERPIDEEFVRKWQLACQGNIAHVVVMPNVTIEKLDDFLSDLIEKRSTWYQDEKTKPPCVAEEIGAENCSCLNHK 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1309261 1311065 + Bma014604.1 Bma02g00148 77398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00148 480 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 304 325 IPR021115 GO:0016831
Bma02g00148 480 Gene3D - 121 362 IPR015421 GO:0003824
Bma02g00148 480 Pfam Pyridoxal-dependent decarboxylase conserved domain 190 402 IPR002129 GO:0016830|GO:0019752|GO:0030170
Bma02g00148 480 PANTHER SERINE DECARBOXYLASE 7 480 - -
Bma02g00148 480 SUPERFAMILY PLP-dependent transferases 100 449 IPR015424 -
Bma02g00148 480 Gene3D Aspartate Aminotransferase, domain 1 363 451 IPR015422 GO:0003824
Bma02g00148 480 PANTHER - 7 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00148 K25193 SDC; serine decarboxylase [EC:4.1.1.-] - vvi:100258141 848.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02632 Bma02g00148 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00148 Bma-Chr2:1309261 Bma12g01270 Bma-Chr12:45712232 1.89E-06 dispersed
Bma01g01408 Bma-Chr1:22315961 Bma02g00148 Bma-Chr2:1309261 4.91E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g341 . Blo12g00692 . Bda03g00511 Bpe02g00086 Bpe04g00467 . Bma01g02632 Cmo05g00502 . . . . . Sed04g0056 . Cpe07g00117 Bhi04g00715 Tan02g2354 Cmetu03g0634 . Hepe10g0527 . . Cla08g01085 Cam08g1537 Cec08g1111 Cco08g1238 Clacu08g1240 . Cre08g1021 Cone4ag1364 Cone7ag1567 . . . . . Cme03g01497 . . Bda11g00753 . Bpe02g01610 . . Bma02g00148 . . . Cma12g00138 Cma05g00479 Car05g00427 . Cpe11g00419 . . . . . . . . . . . . . . . Lsi08g00942 . Chy03g01008 .
Vvi18g1283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00126 . . Bda13g01409 . . . Bma02g00148 . . . . . . Car15g00556 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004732 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 3 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00148 Bma_Chr02 FPKM 137.539169 131.662018 0.030414 0.202975 0.412956 0.430504 0.24953 0.210171 0.194139 0.082212