Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00153 ATGGAAATTTCTGACAAGCCTGGGAAGGAAGAAGCTGAACCTGCATTCAAGTACATTGGAAATGTGCATGGAGATGAACCTGTTGGGCGTGAGCTTCTATTACGACTTGCCAATTGGATATGTGATAACTATTTGAAGGATCCCTTGGCTACGATGATTGTGGAAAACGTTCATCTTCATATACTTCCATCTATGAATCCTGATGGTTTTTCTCTTAAAATGCGCGCTAATGCCAATGGCATTGACCTGAATAGAGATTTTCCTGACCAGTTCTTTCCCATCAATAATGATGAAAGTGCACGAGAGCCGGAGACTAGGGCAATCATGAACTGGTCGAGACAGATACATTTTACTGCATCTGCCAGTTTGCATGGGGGTGCTCTGGTTGCAAATTACCCTTGGGATGGTTCCGAGGATAAAAGGAGAAATTACTATGCATGTCCAGACGATGCAACATTCCAATTCCTGGCAAAAGTTTATAGTCACTCTCACTACAATATGTCTACCAGCAAGGAATTTCAAGATGGAATTACAAACGGAGCTGCATGGTACCCCATATATGGTGGCATGCAGGACTGGAATTATATACACGGTGGTTGTTTTGAATTAACTTTAGAGATTAGTGATGACAAATGGCCCGCTGCAAGTGAGCTTTCTACTATATGGGAATACAACAAAATGAGCATGCTAAATCTCATTGCAAGCCTGGTGAAGACAGGAGTGCATGGGAGAATTTTCTCATCAGATAGTGGAAGGCCTCTTCCTGGCTTTATTACAATTAAGGGAGTAAATTACTCGGTTAAAGCCAGTAAAACATTTGGGAATTACCATCGTTTGGCAACCTCGGGCCAGAAATATGAAGTTACAGCCGCAATGCCCGGATACCGATCGAAAACTACATGTATTTGGTTGGGAGATGGACCCATGGCTGTGGATTTCATTCTTGACCCAGAACTTGCGACCACAGGTAACTCACTCAAAACTCTCTGTGATTGTCCTAACTGTGGAAGCAAGGGCAGACCTGAATTTGTAGAGTACCTTTGGGGGGCTCATTTGGAAGTATACATAGTCATTGCCATTGTTTTAGGATTTCTTTGCCTCTTGTCAAGGAGGAGGGTGAAATCTAGCCCCTCCAAACAAAGGCAGAGCCTCGCACCAAAAAGGTCGACCGCGATCTGA 1179 43.6 MEISDKPGKEEAEPAFKYIGNVHGDEPVGRELLLRLANWICDNYLKDPLATMIVENVHLHILPSMNPDGFSLKMRANANGIDLNRDFPDQFFPINNDESAREPETRAIMNWSRQIHFTASASLHGGALVANYPWDGSEDKRRNYYACPDDATFQFLAKVYSHSHYNMSTSKEFQDGITNGAAWYPIYGGMQDWNYIHGGCFELTLEISDDKWPAASELSTIWEYNKMSMLNLIASLVKTGVHGRIFSSDSGRPLPGFITIKGVNYSVKASKTFGNYHRLATSGQKYEVTAAMPGYRSKTTCIWLGDGPMAVDFILDPELATTGNSLKTLCDCPNCGSKGRPEFVEYLWGAHLEVYIVIAIVLGFLCLLSRRRVKSSPSKQRQSLAPKRSTAI 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1343558 1353348 - Bma014608.1 Bma02g00153 77403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00153 392 Pfam Zinc carboxypeptidase 2 226 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bma02g00153 392 Gene3D Zn peptidases 1 237 - -
Bma02g00153 392 Gene3D - 239 318 - -
Bma02g00153 392 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 1 signature. 14 36 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bma02g00153 392 PANTHER CARBOXYPEPTIDASE D 1 313 IPR015567 GO:0004181|GO:0006518|GO:0008270
Bma02g00153 392 SUPERFAMILY Carboxypeptidase regulatory domain-like 240 319 IPR008969 -
Bma02g00153 392 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 1 313 - -
Bma02g00153 392 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 14 28 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bma02g00153 392 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 121 134 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bma02g00153 392 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 80 88 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bma02g00153 392 SMART zn_carb 70 325 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bma02g00153 392 CDD Peptidase_M14NE-CP-C_like 240 315 - -
Bma02g00153 392 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 2 signature. 124 134 IPR000834 GO:0004181|GO:0006508|GO:0008270
Bma02g00153 392 SUPERFAMILY Zn-dependent exopeptidases 2 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00153 - - K07752 tcc:18592698 627.476
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1320 . . . . . . . . Cmo04g02579 . . . . . Sed11g1378 . . Bhi04g01745 Tan11g1099 . . Hepe02g2814 . Lcy10g1371 Cla08g00746 Cam08g1173 Cec08g0763 Cco08g0870 Clacu08g0879 . Cre08g0681 . . . Cone20ag0364 . . . Cme03g01053 Blo17g00133 . . Bda13g01417 . . . Bma02g00153 . . . . . Car04g02372 . Cpe01g02133 . . . . . . . . . . . . . . . Lsi08g00575 . Chy03g00488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010573 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00153 Bma_Chr02 FPKM 26.962345 28.773943 17.141041 18.909292 23.231363 19.814127 21.276907 17.988268 20.152111 18.979071