Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00160 ATGTCGGAACCCTCTAAAGTGATTCACGTCCGAAATGTGGGTCATGAAATCTCTGATAATGATCTGCTTCAGCTATTCCAGCCATTTGGTGTTATAACTAAGCTCGTAATGCTTCGAGCAAAAAATCAGGCTCTTATCCAAATGCAAGATATTCCTGCAGCAGTCAATGCTTTACAATTCTATGCAAACGTCCAACCAACCATAAGGGGAAGGAATGTTTATGTTCAGTTTTCATCTCATCAAGAACTAACTACAATGGAGCAAAATACTCAAGGACGAGGAGACGAGCCAAACCGTATTCTCTTAGTCACAATTCATCATATGCTATATCCAATAACTGTGGAAGTGCTTCATCAAGTTTTTTTCCCCCACGGATTTGTGGAAAAGATAGTTACATTTCAGAAGTCAGCTGGTTTTCAGGCCCTTATTCAGTATCAATCACGCCAAAGTGCAGTTTCTGCTAGAACTGCACTGCAGGGGCGTAATATCTATGATGGTTGCTGTCAATTGGACATTCAATTCTCAAATCTTGATGAGTTGCAAGTAAATTACAACAATGAACGATCTAGGGATTTTACAAACCCCAACTTACCCTCTGAACAAAGAGGCAGATCCTCCCAGTCTGGGTATGGGGATGCAGGAGGCATGTATGCCCTTCAACCATCCGGGCCCAGATCAGGGGGATTTCCGCAGATGGCCAATGCTGCTGCAATTGCAGCTGCCTTTGGAGGAGGTTTGCCTCCTGGTGTTAGCGGGACAAATGACCGGTGTACAGTTCTTGTTTCAAATTTCAATCCTGATAGAATAGATGAAGATAAGCTCTTCAACCTGTTCTCCATTTATGGCAACATCGTAAGAATTAAACTCCTCCGAAATAAACCAGATCACGCTCTTGTTCAGATGGGAGATGGCTTCCAGGCTGAATTAGCAGTTCACTTCTTAAAGGGAGCATTATTGTTCGGAAAAAGATTGGAGGTCAACTTCTCCAAATATCCAAATATCACTCAAGGAGCCGATACACACGAGTATGTAAATTCAAATCTTAACCGCTTCAATCGTAATGCTGCAAAGAACTACCGATACTGTTGTTCCCCGACAAAGATGATCCATATTTCCTCCCTACCCCAAGAAGTCACTGAGGAGGAGATTGTGAACCACCTTGAGGAGCATGGAGCCATTGCCAACACCAAGCTATTTGAGATGAATGGGAAGAACCAGGCCTTGATTATGTTTGAAACCGAAGAGCAGGCCACTGAGGCCCTCGTCTGCAAGCATGCTACCACAATCGGTGGCTCAATAATGCGGATTTCCTTTTCGCAATTGCAAGGAATCTAA 1335 43.45 MSEPSKVIHVRNVGHEISDNDLLQLFQPFGVITKLVMLRAKNQALIQMQDIPAAVNALQFYANVQPTIRGRNVYVQFSSHQELTTMEQNTQGRGDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPSEQRGRSSQSGYGDAGGMYALQPSGPRSGGFPQMANAAAIAAAFGGGLPPGVSGTNDRCTVLVSNFNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKYPNITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHISSLPQEVTEEEIVNHLEEHGAIANTKLFEMNGKNQALIMFETEEQATEALVCKHATTIGGSIMRISFSQLQGI 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1417473 1424811 - Bma014615.1 Bma02g00160 77410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00160 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 342 - -
Bma02g00160 444 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 443 - -
Bma02g00160 444 Gene3D - 1 98 IPR012677 -
Bma02g00160 444 Gene3D - 350 443 IPR012677 -
Bma02g00160 444 Gene3D - 99 202 IPR012677 -
Bma02g00160 444 MobiDBLite consensus disorder prediction 188 208 - -
Bma02g00160 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Bma02g00160 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 432 IPR000504 GO:0003723
Bma02g00160 444 SUPERFAMILY RNA-binding domain, RBD 3 93 IPR035979 GO:0003676
Bma02g00160 444 SUPERFAMILY RNA-binding domain, RBD 97 198 IPR035979 GO:0003676
Bma02g00160 444 Gene3D - 251 348 IPR012677 -
Bma02g00160 444 CDD RRM4_PTBPH3 360 438 - -
Bma02g00160 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 441 IPR000504 GO:0003723
Bma02g00160 444 MobiDBLite consensus disorder prediction 188 217 - -
Bma02g00160 444 Pfam RRM-like domain 96 175 IPR021790 -
Bma02g00160 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 331 IPR000504 GO:0003723
Bma02g00160 444 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 440 IPR006536 GO:0003723|GO:0005634|GO:0006397
Bma02g00160 444 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 443 - -
Bma02g00160 444 SUPERFAMILY RNA-binding domain, RBD 255 438 IPR035979 GO:0003676
Bma02g00160 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Bma02g00160 444 SMART rrm1_1 102 171 IPR000504 GO:0003723
Bma02g00160 444 SMART rrm1_1 258 327 IPR000504 GO:0003723
Bma02g00160 444 SMART rrm1_1 368 437 IPR000504 GO:0003723
Bma02g00160 444 SMART rrm1_1 7 76 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00160 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - jre:108984238 814.298
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01436 Bma02g00160 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00160 Bma-Chr2:1417473 Bma02g00390 Bma-Chr2:6070780 1.12E-06 dispersed
Bma01g01436 Bma-Chr1:24452987 Bma02g00160 Bma-Chr2:1417473 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00160 Bma_Chr02 FPKM 48.559017 57.582123 8.061074 8.050792 10.460116 5.731011 8.841642 0.378823 1.037788 1.175004