Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00184 ATGTTTGAGGGGAGCTTCCCATTTCGCTCACCCGTTCGTCCGTCCCCGGCTCCGGACCATCCTTTCTCACTTCCGGCGAGGGCTCCGCGAAACAAGCCAGGCTTGAGGATAAAACCGATTTATTGGAGGAGTACAACGTCGAAGCTTAGTTCTGTTGCAGTTCCTTCGAATTCTACTGCTAGGGCTCTCAATCTGACAGTTGGTGGACAGTGGGTGCGAACCGTTGACGAGAATGAGTTGAGAAAGAAACGGGTGTTTTTCTTGGATGTAAATCCACTCTGCTATGCCGGTAGTAGACCTAGCTTAAGCTCGTTTATTCATTGGGTCTCTCTTTTCTTCTGCCAAGTGAGCCGTACTGACCCTGTAATTGCAGTTCTTGATGGGGAAGGGGGTAATGAGTATCGAAGGCAAATACTACCATCATATAAAGCACATAGAAGTAAATTCTCAAGACGTCCATCAACTTCAATGAGACCTTCACATGGTGTTTTTAGAAATTCACATCAAGTTATCATTAATGTCCTTGAAGAATGCAACGTGCCAGTCATAAAAATTGAAGGTCATGAAGCCGATGATGTCGTTGCGACACTTGTAGAACAAGTTTTAGATAGAGGATACAAAGTGGTGATTGGATCTCCAGATAAAGATTTTAAGCAACTCATTTCAGAAGATGTTCAAATTGTTATGCCTTTGGCTGACCTAAACAGATGGTCTTTTTACACCTTAAAGCACTACCTGGCTCAGTATAAGTGTGATCCACGCTCTGACTTGAGTCTCAGATGCATACTCGGCGATGAGGTTGACGGTGTTCCTGGAATTCAGCACGTTGCTCCTGGGTTTGGGAGAAAAACTGCAGTAAAGCTTTTACAGAAGCATGGTTCATTGGAAAATTTACTGAATACGGCCGCCGTAAGAACTGTTGGACGACAATATGCACAAGATGCTCTTGTGAAGTACGCCGACTATCTTCGGAGAAACCAAAAAGTACTGGCTCTAAGAAGGGACGTTGACGTCCAACTTCAAGAGCAATGGTTGGTCGAGAGAGACACGAGCAATGACTCGATCATTTTCTCAAACTTCTCGAAATCATTGAAATGA 1098 44.35 MFEGSFPFRSPVRPSPAPDHPFSLPARAPRNKPGLRIKPIYWRSTTSKLSSVAVPSNSTARALNLTVGGQWVRTVDENELRKKRVFFLDVNPLCYAGSRPSLSSFIHWVSLFFCQVSRTDPVIAVLDGEGGNEYRRQILPSYKAHRSKFSRRPSTSMRPSHGVFRNSHQVIINVLEECNVPVIKIEGHEADDVVATLVEQVLDRGYKVVIGSPDKDFKQLISEDVQIVMPLADLNRWSFYTLKHYLAQYKCDPRSDLSLRCILGDEVDGVPGIQHVAPGFGRKTAVKLLQKHGSLENLLNTAAVRTVGRQYAQDALVKYADYLRRNQKVLALRRDVDVQLQEQWLVERDTSNDSIIFSNFSKSLK 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1682415 1685830 - Bma014641.1 Bma02g00184 77434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00184 365 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 258 351 IPR036279 -
Bma02g00184 365 Gene3D - 249 330 - -
Bma02g00184 365 CDD H3TH_53EXO 262 332 IPR020045 GO:0003677|GO:0003824
Bma02g00184 365 CDD PIN_53EXO 120 230 - -
Bma02g00184 365 SMART 53exo3 83 348 IPR002421 GO:0003677
Bma02g00184 365 Pfam 5'-3' exonuclease, C-terminal SAM fold 258 342 IPR020045 GO:0003677|GO:0003824
Bma02g00184 365 Gene3D - 72 248 - -
Bma02g00184 365 MobiDBLite consensus disorder prediction 1 31 - -
Bma02g00184 365 PANTHER DNA POLYMERASE I 32 364 IPR002298 GO:0003887|GO:0006261
Bma02g00184 365 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 32 364 - -
Bma02g00184 365 Pfam 5'-3' exonuclease, N-terminal resolvase-like domain 109 229 IPR020046 GO:0003677
Bma02g00184 365 SUPERFAMILY PIN domain-like 83 249 IPR029060 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00184 - - - qsu:112017372 459.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00184 Bma-Chr2:1682415 Bma09g00456 Bma-Chr9:38642863 1.25E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1397 . . . . . . . . . . . . . . Sed03g3083 . . Bhi04g02527 Tan11g0060 Cmetu03g2067 . Hepe02g3457 . Lcy10g2348 . . . . . . . . . . . . . . . Blo17g00151 . . Bda13g01440 . Bpe14g00416 . Bma02g00184 . . . . . . . . . . . . . . . . Cla11g00787 Cam11g0821 Cec11g0801 Cco11g0806 Clacu11g1037 Cmu11g0898 Cre11g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011265 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00184 Bma_Chr02 FPKM 17.143373 20.713154 22.377657 19.39867 28.559088 25.338642 25.707924 28.3372 33.230648 32.618183