Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00190 ATGCAGAGGCTGGGGGTGGTGGTTTTGGTTCTGTCAATCTTAGAATTGACCTCGCGTTCTTCTTCTTCGTCCTTGGATGGCGAACCGATTTTCAGGGCGAACGGGAAGGTGTTGGAGCTTGATGATTCCAATTTTGATTCCGCTATTTCATCTTTTGATTTCATCTTGGTCGATTTCTATGCTCCCTGGTGTGGCCACTGCAAGCGTCTTTCTCCGCAGTTAGATGCTGCTGCTCCTGTGCTGGCTGCCTTGAAGGAACCCGTAGTGATTGCAAAAGTAGATGCAGACAAGTTTAAGGTTCTTGGAAAGAAATATGACGTTGATGCATATCCTACTTTGAAGATCTTTGTGCATGGGGTCCCTAATGACTATCATGGGCCCAGAAAACCAGATTTACTTGTAAGATACCTGAAGAAATTTGTTGCTCCTGATGTTTCCATTCTCGATTCAGACTCCGCTATCAAGGACTTTGTCGAAACATCCGGCACTTTTTTTCCCATCTTCATCGGCTTCGGCTTGAGTGAGTCAATTATCTCAGAGTTAGCCATCAAGTACAAGAAAGTGGCATGGTTTTCTGTGGCTAAGGATTTCTCCGAGGATGTTATGATCTCGTACAATTTCGACAAAGTTCCTGCGTTAGTATCTATTCATCCCGCCTACGACGACGAGCAGAACATTTTTTATGGTCCCTTTGAAGATCGATTCTTGGAAGAGTTTATCAAACGAAGTTTTCTCCCTCTTGTTGTGCCTATAAATCACGACACTCTAAAGCTATTGAAAGAAGAGGAAAGGAAAATTGTTCTTGCGCTCGTGGAAGACGAGGATGAAGACGAGACAAAAAACCTGATTAAGCTACTAAAGGCCGGTGCACATGCTAATCGTGGCTTGATATTTGGGTACGTCGGGATCCAGCAGTGGGGAGAGTTTGCTAAAACATTCGGTGCTAATAAGAAGACGACGCTACCAAAATTGGTTGTTTGGGATGGAAACGAGCAATATTTATCGGTCATTGGCTGCGAAACCATAACAGAGGATGACAAAGCGACCCAGGTCTCGAAGTTCCTCCAAGGATACAGGGAAGGAAGAATTGTAGAAAATAGAATTGCCGGTTCGTCAGTTCTCGGCTACATCATTGGGATCGGGGCTGTGTATATTATTGTCTTTATTGTCGGAGTTTGGATGGTTATTAGGAAGATCAATCACGGGGACGAGCCTCCTCGAGTAGGTACCGAACCTGTTGATCCTGCCGCGGTATATGGTAGGGAACCACCCCCTTTGATTCGGGTTGGTACGGGCACCTCAATTGTTCAATCTGTCGAGGACCTTCTCCAAGAACGGGATGCCATTCTTACAACCCTACAAGCTAATTTGGCGAGGGCTCAAGCCCGGATGAAAGACATAGCCGATGGTAAACATCGTGATGTGTCCTTTGCGGAAGGTGACTGGGTTTATGTTAAGTTACAACCCTATAGACAGCGTTCGTTAGCATGGCGACGGAATGAGAAGCTGAGTCCACGTTTTTATGGCCCGTATCGTGTGCTAGCTAAGGTGGGTCAGGTCGCATACAAGTTGCATATGCCAGCCTCCTCCACCATCCATAATGTGTTCCATGTTTCTTTGTTACGACGGGCCGTTGGCAACAATATGGTGGCTACTGCGTTACCATCTACTTTGTCAGACGACATGGAGCTGTTATCGGTTCTGGAGGAAGTATTAGATGTACGTCCTAGTACGGACGGTATTCCGACTAGGGGCGAGGTGCTTATTCGATGGATAGGCTTTGCCAAAGGAGGAGGCAACGTGGGAATTCTTCGATGTCATCACGACTCAATTTCCTCAATTTAA 1845 46.12 MQRLGVVVLVLSILELTSRSSSSSLDGEPIFRANGKVLELDDSNFDSAISSFDFILVDFYAPWCGHCKRLSPQLDAAAPVLAALKEPVVIAKVDADKFKVLGKKYDVDAYPTLKIFVHGVPNDYHGPRKPDLLVRYLKKFVAPDVSILDSDSAIKDFVETSGTFFPIFIGFGLSESIISELAIKYKKVAWFSVAKDFSEDVMISYNFDKVPALVSIHPAYDDEQNIFYGPFEDRFLEEFIKRSFLPLVVPINHDTLKLLKEEERKIVLALVEDEDEDETKNLIKLLKAGAHANRGLIFGYVGIQQWGEFAKTFGANKKTTLPKLVVWDGNEQYLSVIGCETITEDDKATQVSKFLQGYREGRIVENRIAGSSVLGYIIGIGAVYIIVFIVGVWMVIRKINHGDEPPRVGTEPVDPAAVYGREPPPLIRVGTGTSIVQSVEDLLQERDAILTTLQANLARAQARMKDIADGKHRDVSFAEGDWVYVKLQPYRQRSLAWRRNEKLSPRFYGPYRVLAKVGQVAYKLHMPASSTIHNVFHVSLLRRAVGNNMVATALPSTLSDDMELLSVLEEVLDVRPSTDGIPTRGEVLIRWIGFAKGGGNVGILRCHHDSISSI 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1744462 1754054 - Bma014647.2 Bma02g00190 77440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00190 614 PRINTS Thioredoxin family signature 106 117 - -
Bma02g00190 614 PRINTS Thioredoxin family signature 63 72 - -
Bma02g00190 614 PRINTS Thioredoxin family signature 55 63 - -
Bma02g00190 614 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-2 9 406 - -
Bma02g00190 614 Pfam Thioredoxin-like domain 194 333 - -
Bma02g00190 614 ProSitePatterns Thioredoxin family active site. 56 74 IPR017937 -
Bma02g00190 614 ProSiteProfiles Thioredoxin domain profile. 14 142 IPR013766 -
Bma02g00190 614 CDD PDI_a_family 38 137 - -
Bma02g00190 614 SUPERFAMILY Thioredoxin-like 27 142 IPR036249 -
Bma02g00190 614 Gene3D Glutaredoxin 233 367 - -
Bma02g00190 614 Pfam Thioredoxin 37 138 IPR013766 -
Bma02g00190 614 PANTHER PROTEIN DISULFIDE ISOMERASE 9 406 - -
Bma02g00190 614 Gene3D Glutaredoxin 23 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00190 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - jre:108991373 538.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00190 Bma-Chr2:1744462 Bma02g00216 Bma-Chr2:2311589 1.65E-09 dispersed
Bma01g00855 Bma-Chr1:8062415 Bma02g00190 Bma-Chr2:1744462 1.05E-27 transposed
Bma01g02133 Bma-Chr1:77836635 Bma02g00190 Bma-Chr2:1744462 8.84E-12 transposed
Bma07g00858 Bma-Chr7:29620999 Bma02g00190 Bma-Chr2:1744462 4.91E-11 transposed
Bma10g00728 Bma-Chr10:11540533 Bma02g00190 Bma-Chr2:1744462 1.20E-07 transposed
Bma10g00942 Bma-Chr10:19973297 Bma02g00190 Bma-Chr2:1744462 2.92E-09 transposed
Bma10g01338 Bma-Chr10:48964561 Bma02g00190 Bma-Chr2:1744462 1.42E-10 transposed
Bma14g01603 Bma-Chr14:33622352 Bma02g00190 Bma-Chr2:1744462 1.38E-15 transposed
Bma15g00858 Bma-Chr15:22563227 Bma02g00190 Bma-Chr2:1744462 2.52E-24 transposed
Bma01g00794 Bma-Chr1:7441928 Bma02g00190 Bma-Chr2:1744462 7.49E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1206 . . . . . . . Blo17g00155 Blo18g00166 . Bda13g01447 . Bpe14g00408 . Bma02g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006012 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00190 Bma_Chr02 FPKM 4.595897 5.407844 2.967533 2.315704 14.866566 12.176807 12.351098 1.492517 1.279952 1.191768