Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00192 AGAACAATGGCGGTTTCTCAGGTTCCGGTCATCCTAGTGAAAGAGAATATCGAACTGACTGAAATCGAGGGGAAGATTTTCGACAGGCTTCTTGCCACTATTCGTCACTTTGGCCTCCCATATGAGCTCCGAGTTGCCGGCGGTTGGGTTCGCGACAAGCTTCTTGGAAAAGATTGCTATGATATTGATATTGCTCTAGACAATATGTTGGGCAGCGAATTCGTTGAAAAGGTCAGGGAATACTTGTTGTCTGTGGGAGAAGAGGCTCAAGGGATCGCAATTATTCCCAGTAATCCTGATCAGTCGAAACATTTAGAGACAGCGAGGATGCGCATTTTTGACGTATGGATTGATTTTGTGAACTTGCGGAGTGAAGAGTACAGTAATAATAGCCGTATACCAACTAAACAAAAATTTGGGACGGCTGAAGAGGATGCGTATAGAAGGGATTTAACAATCAACAGCTTGTTCTACAATATTAATACCGGGTTAGTTGAAGACTTCACTAAAAGAGGAATTTCAGATCTGAAGTTCGGTAAAATTGTAACTCCATTACCTCCAAAAGAAACGTTTTTAGATGATCCACTCCGAGTTCTTCGAGCCATCCGATTTGGTGCGAGATTCAGATTTACGTTAGATGAAGGACTAAAAGAAGCTGCTTCATGCAATGACGTAAAAAATGCTCTTTCTGCTAAAATTAGCAGAGAGCGTATTGGAACCGAAATTAATCTTATGATAGCTGGGAACCAACCAGTTGATGCGATGAGACACATTGATCATTTGACGTTATTTTGGGTCATTTTCAGCTTACCTCCTAAGATTGAGCCTGCAGTTTTAGAGAGATGTGATGGTGTCAGATTATCATTAAGCTTTTACCAAATCCTCTTTAACACCACCGTGTTAAGTATTTTCGTATCAAATGATTTGCAGAATGAACAGAAAAGGCTGTGTTTATATGCGGCTTTATTTCTCCCATTTAGAAAGACCAGTTATAAAGATCCCAAGTCCAAAAAGATTTCTGTTGTACACTACATTTTCAGGAATTCCCTCAAGCTAAAAGTCAGCGATGCGGAAACTGTTGTTAATGTACATCGGGCGTCAGAGAAGTTCTTGTCTTTGATTGCTTGTCTTACATCTAACGAAGAGAATCAACTTACCGAAGACAACGTGGGGAAAGAATTTGTAGATATTCCTCTTTCCTCAAGGCTTAGAGTATCGATTGGATTTCTTTTGCGTGAAATCAAGGACTTTTGGCGAGTGGCCGTGTGCATTTCTACGTTGTTATATCCCCTCAACATCGATCAAACTGAAGACTTCTTAAATGGGTGCTTTGAATTGGAGCGGCGAAGTCGTTTATTCAGTAGTGTCGAGAATGCAATTATGAAATTAGGTGTTGATAAAGTATGGGAAGTAAAACCTCTGGTAAATGGGAGGGAGATAATGAATATTTTAGGGCTTAAATCTGGAGGACCACTTGTTAGTGAATGGCAACAAAAGCTGATGGCGTGGCAGCTTGCACACCCATCAGCAACTGCAGAAGAATGCGTCGATTGGATGAAACAAGCCGACTCAAAACGCGTAAAAATTGACTGT 1593 40.87 RTMAVSQVPVILVKENIELTEIEGKIFDRLLATIRHFGLPYELRVAGGWVRDKLLGKDCYDIDIALDNMLGSEFVEKVREYLLSVGEEAQGIAIIPSNPDQSKHLETARMRIFDVWIDFVNLRSEEYSNNSRIPTKQKFGTAEEDAYRRDLTINSLFYNINTGLVEDFTKRGISDLKFGKIVTPLPPKETFLDDPLRVLRAIRFGARFRFTLDEGLKEAASCNDVKNALSAKISRERIGTEINLMIAGNQPVDAMRHIDHLTLFWVIFSLPPKIEPAVLERCDGVRLSLSFYQILFNTTVLSIFVSNDLQNEQKRLCLYAALFLPFRKTSYKDPKSKKISVVHYIFRNSLKLKVSDAETVVNVHRASEKFLSLIACLTSNEENQLTEDNVGKEFVDIPLSSRLRVSIGFLLREIKDFWRVAVCISTLLYPLNIDQTEDFLNGCFELERRSRLFSSVENAIMKLGVDKVWEVKPLVNGREIMNILGLKSGGPLVSEWQQKLMAWQLAHPSATAEECVDWMKQADSKRVKIDC 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1786538 1797989 - Bma030858 Bma02g00192 77442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00192 531 Gene3D Beta Polymerase, domain 2 12 177 IPR043519 -
Bma02g00192 531 SUPERFAMILY Nucleotidyltransferase 23 177 IPR043519 -
Bma02g00192 531 SUPERFAMILY Poly A polymerase C-terminal region-like 181 521 - -
Bma02g00192 531 CDD NT_ClassII-CCAase 30 177 IPR002646 GO:0003723|GO:0006396|GO:0016779
Bma02g00192 531 Gene3D - 180 514 - -
Bma02g00192 531 Pfam Poly A polymerase head domain 43 181 IPR002646 GO:0003723|GO:0006396|GO:0016779
Bma02g00192 531 PANTHER TRNA-NUCLEOTIDYLTRANSFERASE 12 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00192 - - - tcc:18592966 735.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00192 Bma-Chr2:1786538 Bma08g00278 Bma-Chr8:3776808 3.11E-08 dispersed
Bma02g00192 Bma-Chr2:1786538 Bma02g00193 Bma-Chr2:1808082 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00156 . . Bda13g01449 . Bpe14g00407 . Bma02g00192 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010577 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00192 Bma_Chr02 FPKM 18.933832 19.195406 27.683199 28.266972 21.049944 24.845991 23.616823 40.271294 37.079788 38.440857