Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00198 ATGTCTGTGATGGAGGTTTACCAGCGTTTATATGTCACCGCCGTCGTTGTGTCAGTGGTTGCCGTAGCCCTAGCAGCACCAACGGCAGCGCAGAGGCAAGCGAAGGACGGGTGCGAGAGCAGCTGCGGCGACGTCTCTATCCCCTTCCCATTCGGCACCAGCGAGAACTGCTATTTGGACGCACAATTCCTCGTCGCCTGCAACAGAACTCTCGACCCTCCAAAGGCAACTCTCCAAGAATCCACCATTCAAGTCCTCAACATCTCTCTGGTTGGCGATATGATCGTCTTAAACCAGAGAGCTGTGGAGTGCTACGACTCAGTAGGGAAGAATAAAAGCGGTGTCTCACCAGGGATGCCCTTCGGGAGGTTTAGAATCTCATCAACCAAGAACAAGTTCACTGTCGTTGGGTGTGACACGATTGGATTGATTAATGGCGTTCTGGACGGGATTCTGAACAAGACTTACATAACTGGGTGCCTCGCTTTTTGCAACAACATCGCTGACGTGATTAATGGGTCTTGCAATGGAGTTGGCTGTTGTCAATCTTCACTCCCTTTGTGGGCACATGATTACAGCATAATTCTTTCAAGTGTTATTAATCGCACTGATGTGCATCAGGTCAATCCCTGTGACTATGGTTTCATTGTTCAAGATGGTTGGTATAACTTCTCCTCTGCTGATCTTTTTGATCTGAGACAAACTCAAGAGTTCCCGATGGTTCTTGGCTGGTCTGTCGGAAATCAAACCTGTCAAAAAGCTCGAGAAAATGGAGTTTATGCTTGCATGGGTAATTCAACCTGCAAAGACGTAGATAATGGTTTTGGTTACAAATGTTTGTGTTTAAATGGTTATTCTGGCAATCCTTACCTCCATGACTGTATAGATATTGATGAATGCAAGAGTTTAAACGACTGCCACGAAAAGGCAATATGTGAAAATAAAATTGGTCTGTATAATTGTTCGTGTCCTAAAGGCTACCGTGGCGACGGCCTTAAAAATGGACCAGGCTGTACAGCCAATCAGAAAAACAGTACCATGATGATTGTGGGATTATCACTAAGCACAAGCCTTTTGGCTCTTCTTTCCGTTGGATTGTGGATATTGTGGGGAGTAAAGCGAAGAAAGTTGCAGCAACTGAGACAGAAATTTTTCCGTCAAAATGGCGGAACGATGCTGCTTCAACAGCTCTCCGGCCATAACGGATCAACCAATGCTACAAAAATATTCACAGAGGAAGATCTGAAGAAGGCGACTAAGGACTTTCATGAAAGTAGGATTATTGGTCAAGGTGGACAAGGAACAGTCTACAAAGGAATTCTGGCAGACAACCGGGTCGTCGCCATTAAAAAAGCTCGAATCGGAGACGAAAGCCAAGTGAAGGATTTCGTCAACGAAGTCGCTTTGCTGTTTAACGTCAGCCATAAGAACGTGGTGAAGCTTTTGGGTTGTTGTTTTGAGACTCAAGTTCCTACTTTGATTTACGAGTACGTCAGCCATGGCTCTCTTCTCGACCATCTGAAGATGGCTGAGACTACTCCGTTTCCATGGGAGCTTCGTTTGAAGATAGCAACAGAGACAGCAGAAGCCCTTTGGTATTTACACTTTCAAGTTTCCACTCCGGTCATTCACAGAGACATTAAATCAGCAAACATACTTCTAGACAAAAATTACACAGCAAAAGTGTCTGATTTTGGAGCTTCGAGATTAGTCCAACGAGACAACGAGAGTCAAAAGGACAACACCGCAGTGCAAGGAACAATCGGATATCTAGATCCGGAGTACATAATAACACAGCAGCTCAACGAAAAGAGTGACGTCTACAGCTTTGGCGTTGTGCTTGTGGAGTTACTTGCAGGAATATCAGTAATTGATTTTAGACGTAATAATCCATCGATAAGCTTAGTAATTCACGTCCTTTCCTCCTTAAAATCCGATAGTCTATCAGAGGTATTAGACCCACAAATAGCGAGTGAGAAGAACATGAAGGAACTTAAGGCAGTGGCTGCGCTGGCAAGAAGCTGTGTGAGCGACAGTGGGGAGGAGAGGCCATCAATGAAACAAGTCTTTTCTGTGCTAGAAGGATTAAGACCGATGGAAAAAACCCGAATCGTCGAAAATAGCAGCGTTGACGTTCACAAAGAGGAGTACTTGCTCGGAGATTTCTCCGACGCCATTAATGACGGTGAAACTAGCGGAACGGCCGTGCATGACAGTATAAAGGCCCAATGTACGTTTGATACTACGTTTGATACTGCTAAGGCCCGTTGA 2271 45.13 MSVMEVYQRLYVTAVVVSVVAVALAAPTAAQRQAKDGCESSCGDVSIPFPFGTSENCYLDAQFLVACNRTLDPPKATLQESTIQVLNISLVGDMIVLNQRAVECYDSVGKNKSGVSPGMPFGRFRISSTKNKFTVVGCDTIGLINGVLDGILNKTYITGCLAFCNNIADVINGSCNGVGCCQSSLPLWAHDYSIILSSVINRTDVHQVNPCDYGFIVQDGWYNFSSADLFDLRQTQEFPMVLGWSVGNQTCQKARENGVYACMGNSTCKDVDNGFGYKCLCLNGYSGNPYLHDCIDIDECKSLNDCHEKAICENKIGLYNCSCPKGYRGDGLKNGPGCTANQKNSTMMIVGLSLSTSLLALLSVGLWILWGVKRRKLQQLRQKFFRQNGGTMLLQQLSGHNGSTNATKIFTEEDLKKATKDFHESRIIGQGGQGTVYKGILADNRVVAIKKARIGDESQVKDFVNEVALLFNVSHKNVVKLLGCCFETQVPTLIYEYVSHGSLLDHLKMAETTPFPWELRLKIATETAEALWYLHFQVSTPVIHRDIKSANILLDKNYTAKVSDFGASRLVQRDNESQKDNTAVQGTIGYLDPEYIITQQLNEKSDVYSFGVVLVELLAGISVIDFRRNNPSISLVIHVLSSLKSDSLSEVLDPQIASEKNMKELKAVAALARSCVSDSGEERPSMKQVFSVLEGLRPMEKTRIVENSSVDVHKEEYLLGDFSDAINDGETSGTAVHDSIKAQCTFDTTFDTAKAR 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2113518 2117780 - Bma014656.1 Bma02g00198 77448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00198 756 Pfam Wall-associated receptor kinase galacturonan-binding 38 93 IPR025287 GO:0030247
Bma02g00198 756 SMART serkin_6 422 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00198 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672|GO:0006468
Bma02g00198 756 CDD EGF_CA 296 330 - -
Bma02g00198 756 ProSitePatterns Calcium-binding EGF-like domain signature. 296 321 IPR018097 GO:0005509
Bma02g00198 756 SUPERFAMILY EGF/Laminin 295 331 - -
Bma02g00198 756 SMART egf_5 250 295 IPR000742 -
Bma02g00198 756 SMART egf_5 299 339 IPR000742 -
Bma02g00198 756 Gene3D Laminin 248 298 - -
Bma02g00198 756 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 733 IPR045274 GO:0007166
Bma02g00198 756 CDD STKc_IRAK 428 696 - -
Bma02g00198 756 Gene3D Transferase(Phosphotransferase) domain 1 498 717 - -
Bma02g00198 756 SUPERFAMILY Protein kinase-like (PK-like) 404 694 IPR011009 -
Bma02g00198 756 ProSiteProfiles Protein kinase domain profile. 422 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00198 756 Pfam Protein kinase domain 422 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00198 756 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 22 733 - -
Bma02g00198 756 Gene3D Phosphorylase Kinase; domain 1 395 497 - -
Bma02g00198 756 Gene3D Laminin 299 340 - -
Bma02g00198 756 Pfam Calcium-binding EGF domain 296 328 IPR001881 GO:0005509
Bma02g00198 756 ProSiteProfiles EGF-like domain profile. 296 339 IPR000742 -
Bma02g00198 756 ProSitePatterns EGF-like domain signature 2. 279 294 IPR000742 -
Bma02g00198 756 SMART egfca_6 296 339 IPR001881 GO:0005509
Bma02g00198 756 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 312 323 IPR000152 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00198 Bma-Chr2:2113518 Bma07g01100 Bma-Chr7:44030119 1.31E-155 dispersed
Bma02g00195 Bma-Chr2:1831481 Bma02g00198 Bma-Chr2:2113518 3.29E-180 proximal
Bma02g00198 Bma-Chr2:2113518 Bma02g00199 Bma-Chr2:2134697 1.57E-81 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66331 PF00069 Pkinase 2.70E-48 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00198 - - gab:108481348 711.835