Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00201 ATGAGCCGTTATCATTCTAATCAGTTTATCTTCTCTTCCTATGATCACAACAATCGCCTTTTTACTGAGGGCGATCCATCCGGTGTTGTTAACTTCTCCGGATTTCGCGAATTCACCTCACATTCTCCTCGTATTTTTTGTAATGATAATTGGTCCCATTCAAGGGGTCAGTCGAGAATTGACGCTGATAGTATACCGGTCATGCAGCATTCGCCTGGTGACTTAGAGCGTCAATTAATTAATCGTCAATTTTGTTACACACCTGACAACACTTATCAGCCAGATAGGGTAAGGGGTTTAGAGGGTAATTCTAGGTTTAGGGTGGATCACAATGATGGGCTTATAACGAATTATTGGGAAGAGCACGGATGCAGGGGAGACAATGAAAATTATCGTGGTCGTCCTCATAACGGTCGTCCTCAAAATGCATCGGAATTTGTCACATCTTTTCATAATCTTAGTTTTGTAAAAGATCAGACGGCATTATGCAATGATATTGAATTGAGCTCGGGAGGTTTTAATGTCCGAAGCAATTCAGTGTGCGACAGAGAGTTAGTCGGGAGTGGTAGAATTGATGATTCTTATGAAATCAAAAGACAAATTGCTAGAGGTGTTCCCAATTCGTCGTTTCAAATGGAAAATAACACAATTGGTAACAATGAGTGGTTTCGAGTGGCAGCTGGTAAGCGTGGGCATCATGTTTCAGAAGTGGGAAGGTGTAACAGTGCTAATAGGGGTGGTGGAGAAAGCAGCCATCAATTCAATGACACTCCAAGGAAACAAGTGCAGAAGAAGAGTGCTTTTCTTAGGCTGCAACTTGCAAAACGTAATCGCAGTGATATAGAAGACGAGTTGGATTATTCAGATAAATTTGAGAAGAAGAGCTTTAGTTTCTTTACAGGGAAAGATCAGAATGGATACAGGGGTGTCAAAATGGGAAAGGTGGAAGAGATAGGGGGAAGTCATGTGGAGCTTGATATTTCATTTAAGTCCAATTCTTTAGTTGCCAAAGCAGTAGTGCCGTCTTCAGCTTCAAGTCCTGTGACTGAGTCCAATGCAATTCCAACATGTAGTTATAAGAAAGTCAAGAATCTTTGTACATCTGACATCTACTTAGCCGGTTCGAAACCAAGTAAATTGGCTCGGAGAACTATGGATATCAATGATTCAACACATCGTGTGAATAACTCTACTTCCACTGACATGAACACTGAAAAGTCTGCCCAAAAAGTTTCAGCTACTGCGGTTTGTAATCTGTTAAAACACAATTCAAAGATTTCTTCCTGCATCAAAAATGGTTTCCGTGAAAATGTGGAAGCTGCTGGCTCTATGGTCTCGAATAAAGAAATTACCACTGTTGGTTGTCCTAAAAGACATTCCTCTGTGAACATCAAAAAGAAAAAGAATGTGAGGAAATTAGTGAAGGCAGTCAACCCTTGTGTACGTGCAGAAAATTCTCATTCTACAAGAAAGCAAGATGAAAATGTCAACCCTCCAGATATTCCCCTTGGAGCCTTTGATTCTGATTTGAGCGTAGAACCATCAAGAAACAGAGCAGCTGTAAAGCCTAATGTTGGTTTGAACTCATGTTTGGATAGTTCTAATATATTACTTGAAGATAGAGTAGTATGTGACGCTCCTGTGGCTATGGAGTCAGAGAAATGTAAAACTGATGCTAATTTTAAGGAGAGACATGTACCAATAATTCAGGTAAAAGATAACATGTCAGATGCTTTCCTTGGTTCTTCAAGCTTCGGTGAAATAATAGATATTGACCTTCCTGTGATTGAAGATAATTCATTTGATATATTGAATACTGAGACAGTTACATTGGATAGTGATAGGACAAGGGTAGAAAGATTTCTTGGTCATGAAAAAAAAGGCTCTTTGGTATGCGGAAATAAGATTGGAGATGAATCTCAAGATCCTATATCTGTTAGTGAAGGGAACCTCAAATTCGATTTGGAAAATTGTGGGGAAATAAAAGCTGATAAATGCAATGAAAAAAATAAAGTTCCTTACTCAGGAACCATTGATGGTATTAACAAGCAGCTTTACTCAAATCAGGAGGCCGAAATCCTTCAGGATGACGACACTAAGGAAATGACAGCAGCGAAATTTTTGGTTGGCAATAGTGAACTTGTTTGTTTGTTATCATCTGACGAAATTAGAGTGCATAATAATTCTATAGCTGCAAACTACTCCAATGACCACCAGGGTTCATGTTGTCACAATAGTGGTACTAACTTTCTAGAGAATGGGGTCATTAAGTATCCGGGAGCTGAGCATGCTGTAGAAGAGCTATCTCCAAATCACTTTGATCTATCATCTGATAATGTTTTAGTCAACATATCTCCTGTGCATACAATTCATTTTGCAGGCAGCAAAGAAACTGTTAATGAGAAGGGACTGGTTTCGACTCATTCAAACTTTTCATGTTCTGGTGACCTAGATGTGGACCTTGCAGATTCAAAAACATTGAGTTTATCTTTGAAAGATTCTAGCCAGATCTCAGTTTCTAGAGTTGGAAATATGGCTTGTGGCAAAGAGCCTGATACTATGGGGCTTAGCATTATGCATAAAAAAAGTTTATCGGATAAGTTGTGTGAGACTAAAAATGAAGCCAGTCATGCAACGGATAAGTTGTGTGAGACTAAAAATGAAGTCAGTCATGCTATGGATAATAGTTCCAGTGAGAGGTCACCTAGATGTAGAAAGAAGATGAAAGTGTCCATCAGCTCTCCCTATTTACCTTTTCCTCGGGATAATGAGGGTTCTACAAATATTTTAACAGGTTATCCAGATGTTCAGTTAAGTTCTAATATTGAACCAACAAAACAAGAAGTTAAAGTTGTGGCATCAAGCATTGATGATCTATATGAAGGTAGTTCTATGCCTTGTAGAGATGAGGGTAGTTTGGATCTTGATTTAGATTTTTCTATGGAATTGTTTGGTACTATAGTTCCTTCTAGTGATCCTTTGAGTGGTATTAATGACTTGAAACTTCGGTCTTCCTGTGTTGACTCTCATCCAGTTCTGGACAATTTAATCAATCCACTAGTGCATTCTAGTGGTTCATTAACATTTGGAAATGGGCAGAGAGCCAATGCCACTAAAGCTTCAGAAGTAATTAATCAAAATCAAACCTACTTCATGGAAACAGATATAGGAAGCAAAGAAAAGATTGCGCATGTGACAGAGGGGAGAGATGTGATTTATGCCAAGAGTGCTCTAAGAGAGTCTCCTGATGAATATCAATCTCCAGCTTCAGTTGAAGAGGTAACAATAATGAATGAGGAATCTGATCATCTTCCAGGGAAGGATGACTTGCATCGTATTGCAAATTATCTGCATTTATCTTCTGATGGAAATGAGGGGTCTGCTGTTAACTCTAGTGATGAAGTAATTGGGTCTGTGATTGATGCACTATCAAATATGGCCTCTCCTGAAACTGGTTCTGATGCTACTGACAAATTCATGTTGAATTCTGAACCATCACTTGCACAAGCTTTTCTTGAAAAGGTTGTGGATTACAAAAACAGAGAAGAGAAGTCTATAGTTGTAAGTCAGCCAAAGAAACTTGCTTATTCTTTACGTATCCCATCTAGCAATGTTAATCATAATTCAGGTAACGTAAAATTACCTCTGGTATCCCAGGTGTCCAAAAGTGCCTTTAACGATCGGAAGCTCGTGTCTGCTAAATCAATGATTAATAAAAAACATCTTGGCCATACCATTTCCACAGGCTTTTCCGGCCAGTCAACTTTCATGTGTGGTTCTTCAAAGAAGTTTGCCTCTTCAATAGGTTCTGTGAAATCTAGGACCTGGCATCGAGCGGATAATTCTAATTCTTCTTCTCTTCCCCTCTCGGGGAACAAGCCTTGCTCAAGTGCAGTTCCTACCCTAAGACAATTTTCAGGAAGCGATGGGGTTCACCAGAATTCTTACATTCGCAAGGGTAACAGTCTTGTAAGAAAATCTTCCCCTGTTTCTGGTATACCTAGTGGTTCTCATGCTGTGAATTTATTTACGTATCAGTTAAACTCTTCTAATGCTGAAGAATTGCGGAATGATGTGAAATCCGAGAGTCTTGGTGTAACTGATTCTTCTATTAATTTGGGGATCAAAGTAACAGAAAATCCTGCCAATAAGCTAGGAATAACCCCGGTTCTTAGTAGTCCTGACACTCTTTCATCTGGGGGTTGTGCACCATCCACGTTGGCAGAGCCACTTCTTAATGATTCCTCGGATTTTATAAAGCTGAGAACTAAAGAAGACTCCGCTTCTTTTAAGGATTTATTGAAGAATTCTGATAAGGATGAAAATCTAGTTTTTCCGAGCATGGAAAATCGGACTGATCTTAGTAATGAGTTTTTGGCATCTTCGAATCTGGAACTAGGAGCACATGCAAAGTGCAATTTAAATCAGTTGGTTTCAACTTCTAATCCTTGTGATCTCAACAGTACAGATAAAGTTCAACCTATTACCTCTGATGGATATTACAAGAGAAGAAAAAATCAGCTAATTCGGGCAGCACTTGATTCTAGTGTTAGTCAGACTCTGATGTCACATCTATCTGACAAGATTTTCAAGTCAGAGCTGGAATATATTGCTAAAGATATTCCTTGCAAGAGTTATACTGGGAGGCGGTTGTCCAAAGGTATGGCAAAGACAAGAAGGCCTGGAAAGTCATCTTTGGTATGGTCACTCTGTGGTTCAATGTCCTCAAAATATGGGAGTAATAATTTGAATGGCCATAAGATGGTACCACATCTTCCTTGGAAAAGAACATATAGAAGTCACGCTCGCAACTCAGCCACCATTCCTTATAGTACACTTAAAAGGTTGCTGTTGTCAAGGGCGACACTGTACACGACATCAAATAATGGGTTTTCACTAAAGAAATCCAAAGTATTAAGTGTTGATGGGTCTAGTTTAAAATGGTCAAAATCCATTGATAGGCGCTCAAAGAAAGCTAACGAGGATGCTACAATAGCAGTTGCTGCAGCAGATAGAAAGAAAAGAGAACAGAATGGGATTGCTCATGTTATTTACAGGACTGACAATAATAGTGGCAGTTCTTCCCATGACGAACCATCTTGCTCTACTGCTGTCAAGTCTGGGAAAAATGCTAAGATATCTTACGCCCCCAGGAGATTAGTGATTGGAAATGATGCATATGTTAGAATTGGCAATGGGAATCAGCTCGTTAGAGATCCGAAAAAGCGAATCCGGCGATTGGCTAGTGAGAAAGTTCGATGGAGTTTGCACACAGCGAGAAAGCGGTTAGGCAGGAAGCAGAAATATTGTCAGTTCTTCACTAGATTTGGCACATGTGATAAGAATGACGGGAAGTGCCCCTATATCCATGATCCTTCTAAAATTGCCGTGTGCACAAAATTTTTAAATGATGCATGTTCTGATGTCAACTGCAAATTGACTCATAAGATCATTCCAGAAAGAATGCCAGATTGCTCATACTTTTTGCAAGGTTTATGCACCAACAAAAGTTGTGCTTATAGACATGTGAATGTGAACCCAATGGCTTCCACGTGTGAAGGATTTCTCAGAGGCTATTGTGCCAATGGCGATGAGTGCCGTGAGAAGCACAGTTATGTATGCCCAGTGTTTGAAGCTACAGGATCCTGTGCCGAGTCCAAATGCAAACTTCACCACCCAAAAAGAAGAAATGTAGTAAAAAAGCGGAAGCGATCAGGGGAGCTCAAGAATGATAGTGGGCGTTATTTTGGATCCATGCCCAACAATTCTACGGAGCCTGAGAAGCTTTCGATGCAGAGTACCAAGCTTTCTGCAGAAGGAGAATTAGCAGATTATATCTGTCTGGATGTCAGTGACGATGAAAGTGGAGAAGTTGGGGGTGATCAGATCTTAGAAGACCTTGATGAGGTAATTGGACCGTTTCGTTTAATGAAGTAG 5937 39.75 MSRYHSNQFIFSSYDHNNRLFTEGDPSGVVNFSGFREFTSHSPRIFCNDNWSHSRGQSRIDADSIPVMQHSPGDLERQLINRQFCYTPDNTYQPDRVRGLEGNSRFRVDHNDGLITNYWEEHGCRGDNENYRGRPHNGRPQNASEFVTSFHNLSFVKDQTALCNDIELSSGGFNVRSNSVCDRELVGSGRIDDSYEIKRQIARGVPNSSFQMENNTIGNNEWFRVAAGKRGHHVSEVGRCNSANRGGGESSHQFNDTPRKQVQKKSAFLRLQLAKRNRSDIEDELDYSDKFEKKSFSFFTGKDQNGYRGVKMGKVEEIGGSHVELDISFKSNSLVAKAVVPSSASSPVTESNAIPTCSYKKVKNLCTSDIYLAGSKPSKLARRTMDINDSTHRVNNSTSTDMNTEKSAQKVSATAVCNLLKHNSKISSCIKNGFRENVEAAGSMVSNKEITTVGCPKRHSSVNIKKKKNVRKLVKAVNPCVRAENSHSTRKQDENVNPPDIPLGAFDSDLSVEPSRNRAAVKPNVGLNSCLDSSNILLEDRVVCDAPVAMESEKCKTDANFKERHVPIIQVKDNMSDAFLGSSSFGEIIDIDLPVIEDNSFDILNTETVTLDSDRTRVERFLGHEKKGSLVCGNKIGDESQDPISVSEGNLKFDLENCGEIKADKCNEKNKVPYSGTIDGINKQLYSNQEAEILQDDDTKEMTAAKFLVGNSELVCLLSSDEIRVHNNSIAANYSNDHQGSCCHNSGTNFLENGVIKYPGAEHAVEELSPNHFDLSSDNVLVNISPVHTIHFAGSKETVNEKGLVSTHSNFSCSGDLDVDLADSKTLSLSLKDSSQISVSRVGNMACGKEPDTMGLSIMHKKSLSDKLCETKNEASHATDKLCETKNEVSHAMDNSSSERSPRCRKKMKVSISSPYLPFPRDNEGSTNILTGYPDVQLSSNIEPTKQEVKVVASSIDDLYEGSSMPCRDEGSLDLDLDFSMELFGTIVPSSDPLSGINDLKLRSSCVDSHPVLDNLINPLVHSSGSLTFGNGQRANATKASEVINQNQTYFMETDIGSKEKIAHVTEGRDVIYAKSALRESPDEYQSPASVEEVTIMNEESDHLPGKDDLHRIANYLHLSSDGNEGSAVNSSDEVIGSVIDALSNMASPETGSDATDKFMLNSEPSLAQAFLEKVVDYKNREEKSIVVSQPKKLAYSLRIPSSNVNHNSGNVKLPLVSQVSKSAFNDRKLVSAKSMINKKHLGHTISTGFSGQSTFMCGSSKKFASSIGSVKSRTWHRADNSNSSSLPLSGNKPCSSAVPTLRQFSGSDGVHQNSYIRKGNSLVRKSSPVSGIPSGSHAVNLFTYQLNSSNAEELRNDVKSESLGVTDSSINLGIKVTENPANKLGITPVLSSPDTLSSGGCAPSTLAEPLLNDSSDFIKLRTKEDSASFKDLLKNSDKDENLVFPSMENRTDLSNEFLASSNLELGAHAKCNLNQLVSTSNPCDLNSTDKVQPITSDGYYKRRKNQLIRAALDSSVSQTLMSHLSDKIFKSELEYIAKDIPCKSYTGRRLSKGMAKTRRPGKSSLVWSLCGSMSSKYGSNNLNGHKMVPHLPWKRTYRSHARNSATIPYSTLKRLLLSRATLYTTSNNGFSLKKSKVLSVDGSSLKWSKSIDRRSKKANEDATIAVAAADRKKREQNGIAHVIYRTDNNSGSSSHDEPSCSTAVKSGKNAKISYAPRRLVIGNDAYVRIGNGNQLVRDPKKRIRRLASEKVRWSLHTARKRLGRKQKYCQFFTRFGTCDKNDGKCPYIHDPSKIAVCTKFLNDACSDVNCKLTHKIIPERMPDCSYFLQGLCTNKSCAYRHVNVNPMASTCEGFLRGYCANGDECREKHSYVCPVFEATGSCAESKCKLHHPKRRNVVKKRKRSGELKNDSGRYFGSMPNNSTEPEKLSMQSTKLSAEGELADYICLDVSDDESGEVGGDQILEDLDEVIGPFRLMK 1978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2179879 2187958 - Bma014659.1 Bma02g00201 77451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00201 1978 ProSiteProfiles Zinc finger C3H1-type profile. 1819 1845 IPR000571 GO:0046872
Bma02g00201 1978 Gene3D - 1847 1907 - -
Bma02g00201 1978 Gene3D - 1791 1846 - -
Bma02g00201 1978 Coils Coil 1974 1978 - -
Bma02g00201 1978 MobiDBLite consensus disorder prediction 239 261 - -
Bma02g00201 1978 ProSiteProfiles Zinc finger C3H1-type profile. 1846 1873 IPR000571 GO:0046872
Bma02g00201 1978 PANTHER CCCH ZINGC FINGER 316 1977 - -
Bma02g00201 1978 MobiDBLite consensus disorder prediction 1901 1927 - -
Bma02g00201 1978 MobiDBLite consensus disorder prediction 244 261 - -
Bma02g00201 1978 SMART c3hfinal6 1873 1894 IPR000571 GO:0046872
Bma02g00201 1978 SMART c3hfinal6 1764 1792 IPR000571 GO:0046872
Bma02g00201 1978 SMART c3hfinal6 1846 1872 IPR000571 GO:0046872
Bma02g00201 1978 SMART c3hfinal6 1819 1844 IPR000571 GO:0046872
Bma02g00201 1978 ProSiteProfiles Zinc finger C3H1-type profile. 1764 1793 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00201 - - - jre:109004825 954.896
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00201 Bma-Chr2:2179879 Bma13g01252 Bma-Chr13:45840034 6.66E-55 dispersed
Bma02g00201 Bma-Chr2:2179879 Bma11g00441 Bma-Chr11:4959984 1.31E-07 transposed
Bma02g00201 Bma-Chr2:2179879 Bma11g00467 Bma-Chr11:5612818 1.32E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g208 . . . . . . . . . . Cma01g01036 . Car01g00911 . . . . . . . . . . . . . . . . . . Cone4ag1435 Cone7ag1500 . . . . . . Blo17g00165 . . . . Bpe14g00400 . Bma02g00201 . Cmo01g01075 . . . . . . Cpe02g00855 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003643 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 2 1 2 3 12 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56850 None None None None Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00201 Bma_Chr02 FPKM 8.124551 10.673867 2.085704 2.013657 7.791368 8.591246 6.773689 1.460284 1.630287 1.272338