Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00206 ATGTATAGTTCAGGTGAACAACTTAGCGATGATATTGATTTGACGAGACGAATATGTAAAATTATGATGACTTGTCCAGCATTGGCACTTGATACTGCACTCAACCAAAGTGGAATTAAGATTTCAACAAACATTGTCGAGGATGTTCTAAACAGATTTGAGAACGCTGGTATGGTTGCATTTCGGTTCTTTCAATGGGCCGAGAAGCAAGGAAGTTATAGCCACAGCATAAAGGCTTATCACACCATGATTGGGTCTTTAGCCAAGATAAGGCAGTATCAAATTATGTGGGATCTAGTGAATGCGATGAGGAGCAAACGAATACAAAATGTAGAGACTTTTTGTATAATCATGAGAAAATATGCTCGAGCCCAGAAGGTGGACGAGGCCGTTTATGCCTTTAATGTGATGGATAAATATGGTATCGAACCGAATATAGTGGCATTCAACGGTCTACTAAGTGCTTTGTGCAAGTCCAAGAATGTGAGGAAGGCTCAAGAAATTTTTGATAGTATGAAGGATCGATACGAACCAGATCCGAAAACTTACAGTATTCTGCTCCAAGGATGGGGTAAGGCTCCAAATCTGCCTCAAGCAAGGGGAATTTTCAGAGAAATGATCAACGATGGTTGCACCCCTGACATAGTGACGTACAGCATTATGGTTGATATCCTCTGCAAGGCCGGGAGAGTTGATGAAGCCATTGAGATTGTTAACGAAATGAATTCTAAGTCATTCACCCCTACATCTTTCACTTATAGTGTTTTGATCCATACTTATGGGACAGAAAATCGAATAGAAGATGCTGTCAGAACATTCTCGGAGATGGAAAAAGACGGAGTTACGGCTGACGTAGCTGTTTATAACGCATTGATTAGCGCTTTTTGCAAAGCAAACAAGACGAAGAATGCCAATAGAGTCATGCATGAGATGGAAAATAAAGGGGTCAAGCCTAATTCTCGAACGTTTAATATCGTTCTTCACAATTTGATCGACCGCGGGGAGACGGATGAAGCCTTCGCCGTCTTTCGCAAGATGATCAAAATTTGCGATCCCGATTCAGACACATATACGATGATTGTGAAGATGTTTTGTGATAAGAATCAATTAAAGGAAGCTCGTAAAGTTTGGAAGTATATGAGGTCTAAGAAGTTTGTTCCTAGCATGCATACTTATTCTGTGCTGATAAATGGGTTGTGCAAGATGGGTGACGCCTTGAAAGCTAGTGTGATTTTGGAGGAGATGATAGAGAAGGGAATTCGACCGCCGAGTGTGACGTTCGGAAGGCTTCGACAGTTGCTTTTGAAAGACGGTAGAGAAGATGTTCTTAATTTTCTTCAAGGAAAAATGAATCTACTTGTGCAGGAGCCGTTGTGCGATTGA 1383 41.14 MYSSGEQLSDDIDLTRRICKIMMTCPALALDTALNQSGIKISTNIVEDVLNRFENAGMVAFRFFQWAEKQGSYSHSIKAYHTMIGSLAKIRQYQIMWDLVNAMRSKRIQNVETFCIIMRKYARAQKVDEAVYAFNVMDKYGIEPNIVAFNGLLSALCKSKNVRKAQEIFDSMKDRYEPDPKTYSILLQGWGKAPNLPQARGIFREMINDGCTPDIVTYSIMVDILCKAGRVDEAIEIVNEMNSKSFTPTSFTYSVLIHTYGTENRIEDAVRTFSEMEKDGVTADVAVYNALISAFCKANKTKNANRVMHEMENKGVKPNSRTFNIVLHNLIDRGETDEAFAVFRKMIKICDPDSDTYTMIVKMFCDKNQLKEARKVWKYMRSKKFVPSMHTYSVLINGLCKMGDALKASVILEEMIEKGIRPPSVTFGRLRQLLLKDGREDVLNFLQGKMNLLVQEPLCD 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2240165 2241547 - Bma030859 Bma02g00206 77456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00206 460 SUPERFAMILY HCP-like 257 421 - -
Bma02g00206 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Bma02g00206 460 Gene3D Tetratricopeptide repeat domain 333 447 IPR011990 GO:0005515
Bma02g00206 460 Gene3D Tetratricopeptide repeat domain 245 332 IPR011990 GO:0005515
Bma02g00206 460 Pfam PPR repeat 113 142 IPR002885 -
Bma02g00206 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Bma02g00206 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Bma02g00206 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Bma02g00206 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Bma02g00206 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Bma02g00206 460 TIGRFAM PPR: pentatricopeptide repeat domain 390 422 IPR002885 -
Bma02g00206 460 TIGRFAM PPR: pentatricopeptide repeat domain 322 348 IPR002885 -
Bma02g00206 460 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Bma02g00206 460 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Bma02g00206 460 TIGRFAM PPR: pentatricopeptide repeat domain 216 249 IPR002885 -
Bma02g00206 460 TIGRFAM PPR: pentatricopeptide repeat domain 147 175 IPR002885 -
Bma02g00206 460 TIGRFAM PPR: pentatricopeptide repeat domain 182 215 IPR002885 -
Bma02g00206 460 TIGRFAM PPR: pentatricopeptide repeat domain 251 284 IPR002885 -
Bma02g00206 460 TIGRFAM PPR: pentatricopeptide repeat domain 356 388 IPR002885 -
Bma02g00206 460 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 457 - -
Bma02g00206 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 349 IPR002885 -
Bma02g00206 460 SUPERFAMILY TPR-like 109 378 IPR011990 GO:0005515
Bma02g00206 460 Pfam PPR repeat 209 241 IPR002885 -
Bma02g00206 460 Pfam PPR repeat 246 277 IPR002885 -
Bma02g00206 460 Pfam PPR repeat family 144 189 IPR002885 -
Bma02g00206 460 Pfam PPR repeat family 284 330 IPR002885 -
Bma02g00206 460 Pfam PPR repeat family 352 401 IPR002885 -
Bma02g00206 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Bma02g00206 460 Gene3D Tetratricopeptide repeat domain 29 174 IPR011990 GO:0005515
Bma02g00206 460 Gene3D Tetratricopeptide repeat domain 175 244 IPR011990 GO:0005515
Bma02g00206 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 175 IPR002885 -
Bma02g00206 460 PANTHER OS03G0761300 PROTEIN 1 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00206 - - - qsu:112022190 700.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02153 Bma-Chr1:78072429 Bma02g00206 Bma-Chr2:2240165 8.15E-29 dispersed
Bma01g02162 Bma-Chr1:78457949 Bma02g00206 Bma-Chr2:2240165 7.78E-29 dispersed
Bma02g00206 Bma-Chr2:2240165 Bma13g00775 Bma-Chr13:28069903 1.25E-86 dispersed
Bma02g00625 Bma-Chr2:15325956 Bma02g00206 Bma-Chr2:2240165 9.30E-13 dispersed
Bma06g00196 Bma-Chr6:2399954 Bma02g00206 Bma-Chr2:2240165 1.63E-19 dispersed
Bma07g01219 Bma-Chr7:47093925 Bma02g00206 Bma-Chr2:2240165 2.22E-12 dispersed
Bma13g00723 Bma-Chr13:21347794 Bma02g00206 Bma-Chr2:2240165 2.46E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00206 Bma_Chr02 FPKM 0.0 0.0 0.0 1.669568 1.857429 0.0 1.241859 2.923447 1.088505 1.861181