Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00213 ATGACCCAAGTAGTCTCTTTAATGGACGTCGATAACGATGACCACAATCGTTCTCCCAAACTTAGCAAGGGCAAAAATGTTGTCGCTTCGGTCACTCCCCCCGACGGCAAAGCCACACCTTGGGTTGAGAAGTACCGCCCTCAGTCTCTTGCAGACGTTGCTGCCCATCGAGATATCGTCGATACCATTGATAGGCTGACCAGCGAGAATAGGTTGCCACATCTCCTGTTATATGGTCCTCCAGGTACTGGTAAAACATCGACCATTCTTGCTGTTGCACGGAAGCTTTATGGAGCACGCTACCACAATATGATACTCGAGCTGAATGCATCAGATGATAGGGGAATTGACGTTGTGAGGCAACAGATCCAGGATTTTGCTAGTACTCAAAGCTTCTCATTTGGGGCGAAGTCCTCAGTGAAATTGGTATTGTTAGATGAGGCGGATGCCATGACAAAAGATGCACAGTTTGCGTTGCGTAGAGTTATCGAGAAATACACCAAGAACACTAGATTTGCACTTATATGCAATCATGTCAATAAGATTATTCCAGCCTTACAGTCAAGATGTACACGCTTTCGTTTTCCACCCCTTGACAACGTCCATGTTACCGATCGGCTCAAATATGTTATAGAAGCTGAAATAACTTTTTTTAATTCAACACATATGGCTTCTAATCAGATAACAGAGGAAGCTGTCTATCTGTGCACTGGAAATCCAATGCCCATGGACATAGAGCAAATATCTTACTGGCTTCTGAACGAACCATTTGCAGAAAGTTTCAGAAGGATATCTGAAATCAAGTCAAAAAAAGGACTTGCCTTGGTTGATATTGTAAGAGAAGTGACCATGTTTGTTTTCAGGATTACGATGCCGTCAGATGTTCGAGTTCAATTGATAAATGATTTGGCCGACATTGAGTACCGATTGACTTTTGGGTGCAATGATAAGTTGCAGCTTGGATCCCTCATTGCTACCTTCACCCAAGCCCGATCCATGCTAGTTCGTGCCGCAAAGTAG 1020 43.92 MTQVVSLMDVDNDDHNRSPKLSKGKNVVASVTPPDGKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGARYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFPPLDNVHVTDRLKYVIEAEITFFNSTHMASNQITEEAVYLCTGNPMPMDIEQISYWLLNEPFAESFRRISEIKSKKGLALVDIVREVTMFVFRITMPSDVRVQLINDLADIEYRLTFGCNDKLQLGSLIATFTQARSMLVRAAK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2279343 2283500 - Bma014670.1 Bma02g00213 77463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00213 339 Pfam ATPase family associated with various cellular activities (AAA) 75 194 IPR003959 GO:0005524|GO:0016887
Bma02g00213 339 PANTHER REPLICATION FACTOR C SUBUNIT 5 217 335 - -
Bma02g00213 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 241 IPR027417 -
Bma02g00213 339 Pfam Replication factor C C-terminal domain 240 325 IPR013748 -
Bma02g00213 339 MobiDBLite consensus disorder prediction 1 33 - -
Bma02g00213 339 SUPERFAMILY post-AAA+ oligomerization domain-like 240 331 IPR008921 GO:0003677|GO:0006260
Bma02g00213 339 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 36 214 - -
Bma02g00213 339 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 217 335 - -
Bma02g00213 339 CDD AAA 59 197 - -
Bma02g00213 339 SMART AAA_5 71 202 IPR003593 -
Bma02g00213 339 PANTHER REPLICATION FACTOR C SUBUNIT 5 36 214 - -
Bma02g00213 339 Gene3D - 35 196 IPR027417 -
Bma02g00213 339 Gene3D - 240 337 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00807 Bma02g00213 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00213 Bma-Chr2:2279343 Bma06g01245 Bma-Chr6:49607656 1.63E-13 dispersed
Bma04g00016 Bma-Chr4:217900 Bma02g00213 Bma-Chr2:2279343 3.29E-55 transposed
Bma05g00808 Bma-Chr5:45416612 Bma02g00213 Bma-Chr2:2279343 1.07E-55 transposed
Bma01g00807 Bma-Chr1:7547519 Bma02g00213 Bma-Chr2:2279343 2.77E-131 wgd
Bma01g02668 Bma-Chr1:84176956 Bma02g00213 Bma-Chr2:2279343 2.31E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00213 K10756 - tcc:18592371 568.926