Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g00213 | ATGACCCAAGTAGTCTCTTTAATGGACGTCGATAACGATGACCACAATCGTTCTCCCAAACTTAGCAAGGGCAAAAATGTTGTCGCTTCGGTCACTCCCCCCGACGGCAAAGCCACACCTTGGGTTGAGAAGTACCGCCCTCAGTCTCTTGCAGACGTTGCTGCCCATCGAGATATCGTCGATACCATTGATAGGCTGACCAGCGAGAATAGGTTGCCACATCTCCTGTTATATGGTCCTCCAGGTACTGGTAAAACATCGACCATTCTTGCTGTTGCACGGAAGCTTTATGGAGCACGCTACCACAATATGATACTCGAGCTGAATGCATCAGATGATAGGGGAATTGACGTTGTGAGGCAACAGATCCAGGATTTTGCTAGTACTCAAAGCTTCTCATTTGGGGCGAAGTCCTCAGTGAAATTGGTATTGTTAGATGAGGCGGATGCCATGACAAAAGATGCACAGTTTGCGTTGCGTAGAGTTATCGAGAAATACACCAAGAACACTAGATTTGCACTTATATGCAATCATGTCAATAAGATTATTCCAGCCTTACAGTCAAGATGTACACGCTTTCGTTTTCCACCCCTTGACAACGTCCATGTTACCGATCGGCTCAAATATGTTATAGAAGCTGAAATAACTTTTTTTAATTCAACACATATGGCTTCTAATCAGATAACAGAGGAAGCTGTCTATCTGTGCACTGGAAATCCAATGCCCATGGACATAGAGCAAATATCTTACTGGCTTCTGAACGAACCATTTGCAGAAAGTTTCAGAAGGATATCTGAAATCAAGTCAAAAAAAGGACTTGCCTTGGTTGATATTGTAAGAGAAGTGACCATGTTTGTTTTCAGGATTACGATGCCGTCAGATGTTCGAGTTCAATTGATAAATGATTTGGCCGACATTGAGTACCGATTGACTTTTGGGTGCAATGATAAGTTGCAGCTTGGATCCCTCATTGCTACCTTCACCCAAGCCCGATCCATGCTAGTTCGTGCCGCAAAGTAG | 1020 | 43.92 | MTQVVSLMDVDNDDHNRSPKLSKGKNVVASVTPPDGKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGARYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFPPLDNVHVTDRLKYVIEAEITFFNSTHMASNQITEEAVYLCTGNPMPMDIEQISYWLLNEPFAESFRRISEIKSKKGLALVDIVREVTMFVFRITMPSDVRVQLINDLADIEYRLTFGCNDKLQLGSLIATFTQARSMLVRAAK | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2279343 | 2283500 | - | Bma014670.1 | Bma02g00213 | 77463 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g00213 | 339 | Pfam | ATPase family associated with various cellular activities (AAA) | 75 | 194 | IPR003959 | GO:0005524|GO:0016887 | |
Bma02g00213 | 339 | PANTHER | REPLICATION FACTOR C SUBUNIT 5 | 217 | 335 | - | - | |
Bma02g00213 | 339 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 39 | 241 | IPR027417 | - | |
Bma02g00213 | 339 | Pfam | Replication factor C C-terminal domain | 240 | 325 | IPR013748 | - | |
Bma02g00213 | 339 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Bma02g00213 | 339 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 240 | 331 | IPR008921 | GO:0003677|GO:0006260 | |
Bma02g00213 | 339 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 36 | 214 | - | - | |
Bma02g00213 | 339 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 217 | 335 | - | - | |
Bma02g00213 | 339 | CDD | AAA | 59 | 197 | - | - | |
Bma02g00213 | 339 | SMART | AAA_5 | 71 | 202 | IPR003593 | - | |
Bma02g00213 | 339 | PANTHER | REPLICATION FACTOR C SUBUNIT 5 | 36 | 214 | - | - | |
Bma02g00213 | 339 | Gene3D | - | 35 | 196 | IPR027417 | - | |
Bma02g00213 | 339 | Gene3D | - | 240 | 337 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g00807 | Bma02g00213 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g00213 | Bma-Chr2:2279343 | Bma06g01245 | Bma-Chr6:49607656 | 1.63E-13 | dispersed | |
Bma04g00016 | Bma-Chr4:217900 | Bma02g00213 | Bma-Chr2:2279343 | 3.29E-55 | transposed | |
Bma05g00808 | Bma-Chr5:45416612 | Bma02g00213 | Bma-Chr2:2279343 | 1.07E-55 | transposed | |
Bma01g00807 | Bma-Chr1:7547519 | Bma02g00213 | Bma-Chr2:2279343 | 2.77E-131 | wgd | |
Bma01g02668 | Bma-Chr1:84176956 | Bma02g00213 | Bma-Chr2:2279343 | 2.31E-29 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g00213 | K10756 | - | tcc:18592371 | 568.926 |