Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00215 ATGGTTTCTGCTGTCACTTTTGGCGCCGCCGCTGCTTCCTCCTCTTCTCGCTTCGTGTATTCAGCTTCTAAAGCTACGGTCTCACTCTCTTCCTTTTCCCCTTCCCTTTTGCCTCACTCCTCCGGTTCATCCTCCTCCTCATCCGCTGATTTCAGGTTGCTGAGATCTTCGCCTCGCATTTCTCGCTTATTTCTTAGTCAGAGGAGGTCGAATTCGTATGTTTCAAAAAGAGGAATCAACTCGGTTTCTTCTCCCAAATGCTTGGCTTCGTATGCTGAGCAGTTGAAGGGTGCCCGCGAAGATATCAAAGAGCTTCTCAAAACTTCGTTTTGTCATCCTGTTTTGGTTCGCCTTGCTTGGCATGATTCTGGTACTTATAGCAAAGAAATTGAGGAGTGGCCGCAGAGAGGTGGAGCTAATGGAAGTCTGAGATTTGATGTGGAGCTGAAACATGCTGCCAATGCTGGTCTGGTGAATGCGGTGAAGCTTATTGAGCCAATCAAAGAGAAATATCCTTCTCTGACATATGCGGATTTGTTTCAGTTGGCCAGTGTTACAGCAATTGAGGATGGTGGGGGACCCAAAATTCCAATGAAATACGGTCGAGTGGATACCTCCGGACCAGAGCAATCCCCAGAAGAAGGGAGGCTTCCCGATGCTGGTCCTCCATCACCGGCTGGACATCTACGTGAAGTTTTCTATAGAATGGGCTTTGATGATAAGGAAATAGTTGCATTGTCAGGCGCACATACATTAGGTCGAGCAAGACCTGAACGGAGTGGTTGGGGCAAACCAGAGACCAAATATACGAAAGATGGACCAGGAGCCCCAGGAGGACAATCCTGGACAGTGCGATGGTTGAAGTTTGATAATTCTTATTTTAAGGATATCAAAGAAAGGAAAGATGAAGACTTATTGGTGTTACCTACAGATGCTGCTCTTTTTGAAGATCCATTGTTCAAGGTTTATGCTGAGAAGTATGCTGAAGATCAAGAAGCCTTCTTCAAAGATTATGCAGAGGCCCATGCCAAACTCAGCGACCTTGGAGCCAAATTTGATCCTCCGGAGGGTGTCGTTATTGATGACAGTCCTTCAAAACCTGGTGGAGAGAAGTTTGTGGCAGCCAAATACTCATCTGGAAAGAGGGAGCTATCAGAGACCATGAAGCAGAAGATTCGGGCAGAGTATGAAGCTGTTGGTGGAAGTCCAGATAAGCCTTTACAGTCAAACTATTTTCTAAATATCATGATTGTGATTGCTGTTTTGGCTCTTTTGACATCTCTGCTTGGAAACTAA 1296 45.91 MVSAVTFGAAAASSSSRFVYSASKATVSLSSFSPSLLPHSSGSSSSSSADFRLLRSSPRISRLFLSQRRSNSYVSKRGINSVSSPKCLASYAEQLKGAREDIKELLKTSFCHPVLVRLAWHDSGTYSKEIEEWPQRGGANGSLRFDVELKHAANAGLVNAVKLIEPIKEKYPSLTYADLFQLASVTAIEDGGGPKIPMKYGRVDTSGPEQSPEEGRLPDAGPPSPAGHLREVFYRMGFDDKEIVALSGAHTLGRARPERSGWGKPETKYTKDGPGAPGGQSWTVRWLKFDNSYFKDIKERKDEDLLVLPTDAALFEDPLFKVYAEKYAEDQEAFFKDYAEAHAKLSDLGAKFDPPEGVVIDDSPSKPGGEKFVAAKYSSGKRELSETMKQKIRAEYEAVGGSPDKPLQSNYFLNIMIVIAVLALLTSLLGN 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2306259 2310758 + Bma014672.1 Bma02g00215 77465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00215 431 ProSitePatterns Peroxidases proximal heme-ligand signature. 242 252 IPR019793 -
Bma02g00215 431 PANTHER L-ASCORBATE PEROXIDASE 8, CHLOROPLASTIC-RELATED 9 431 - -
Bma02g00215 431 SUPERFAMILY Heme-dependent peroxidases 96 351 IPR010255 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 Coils Coil 88 108 - -
Bma02g00215 431 PRINTS Plant ascorbate peroxidase signature 311 335 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 PRINTS Plant ascorbate peroxidase signature 91 111 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 PRINTS Plant ascorbate peroxidase signature 173 191 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 PRINTS Plant ascorbate peroxidase signature 112 127 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 PRINTS Plant ascorbate peroxidase signature 192 204 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 Gene3D Peroxidase, domain 2 220 343 - -
Bma02g00215 431 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 9 431 IPR044831 GO:0004601|GO:0034599
Bma02g00215 431 MobiDBLite consensus disorder prediction 254 277 - -
Bma02g00215 431 CDD ascorbate_peroxidase 89 353 - -
Bma02g00215 431 Pfam Peroxidase 99 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 Gene3D - 98 351 - -
Bma02g00215 431 ProSiteProfiles Plant heme peroxidase family profile. 113 370 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 PRINTS Haem peroxidase superfamily signature 174 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 PRINTS Haem peroxidase superfamily signature 282 297 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 PRINTS Haem peroxidase superfamily signature 112 126 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 PRINTS Haem peroxidase superfamily signature 192 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00215 431 MobiDBLite consensus disorder prediction 202 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00215 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - zju:107421087 657.136
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00808 Bma02g00215 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00215 Bma-Chr2:2306259 Bma03g00605 Bma-Chr3:4987954 3.87E-77 dispersed
Bma01g00808 Bma-Chr1:7550929 Bma02g00215 Bma-Chr2:2306259 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g248 . . . . . . . . Cmo04g02484 Cmo15g00678 . . . . Sed01g3111 . . Bhi04g01899 Tan11g1263 Cmetu03g1741 . Hepe02g2244 . . Cla08g00603 Cam08g1017 Cec08g0607 Cco08g0718 Clacu08g0728 . Cre08g0536 . Cone7ag1522 Cone17ag1289 Cone20ag0439 . . . Cme03g00534 Blo17g00174 . . Bda13g01479 Bpe02g01647 Bpe14g00386 Bma01g00808 Bma02g00215 . . . . . Car04g02298 Car15g00616 Cpe01g02059 . . . . . . . . . . . . . . . Lsi08g00443 . Chy03g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003748 3 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00215 Bma_Chr02 FPKM 7.937068 8.230308 9.64929 10.767878 6.1402 5.631054 6.260367 9.706111 8.304979 10.153077