Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00216 CCGGCAATGGCGTCTCTGTCTTCGTTTTTCTGTTTTTTTATTGCTTTTTCTCTCTTCGTTTCGTCTTTTACCGCCATCTCCGCCCAAGAGTCTGAGTCTGAGTCTGTGGCTGAATCTAAGGAGTTTGTGCTCTCTTTGGACCACTCTAACTTCTACGACACCGTCGGCAAGCACGATTTCATCGTCGTCGAGTTCTTCGCCCCCTGGTGTGGACACTGCAAGAATCTTGCACCAGAGTATGAAAAGGCAGCATCAATCTTGAGCAGTCACGACCCTCCACTAATTTTAGCCAAAGTTGACGCCAGTGATGAAGCAAACAGCGATCTAGCAAATGAGTTTGAAGTTAGTGGTCTCCCCACAATTAAGATTTTGAAAAATGGGGGCAAGATCATTCAAGATTATAAGGGTCCTCATGAGGCTGATGGAATTGTTTCCTATTTGAAGAAACAAAGGGGACCTGCTTCTGTTGAAATTAAGTCAACAGAAAATGCTACTAATCTTATTGGTGACGATGAGAAGATAGTCGGGATTTTCCGACAATTTTCAGGAGAGGAGTTCGAAAATTATACGGCTATAGCAGAGAAGCTCCGTTCGGACTATGATTTCGGGCATACTTCGGATGCGAAGGTACTCCCGCGGGGAGAAGCATCTGTCACGGGTCCAGTGGTTAGGATATTCAAACCGTTTGATGAACTTTTTGTTGATTTTGAGGATTTTGATATGGACGCCGTAGAGAAGTTCATCGAAGAGTCAAACGTGCCGGTTGTGACCGTCTTCGATAACGACACGAGCAAACACCGATATGTTATGAAATTCTTCGAGAATGAAAAGGACGACAAAGCTATGCTGTTTTATAACTTCAGCACTGAGCTTGCTCTGTCTTTCGAATCGAATTTTCGCAAACTTGCCGAACAATATAAAGGAAAGGGCATATACTTTCTGATTGGAGATCTCGACCCGAGCGAAGGTGCACTTCAGTACTTTGGAATTAAAGATGATCAAGTTCCTGCAATTGTCATTCATACTAATTCCGGACGGAAATATATGAAACCGAATGTCTATCCCGATCAGATCGCTCAATGGTTTAAAGAATATGAGGCTGGACATCTGCTGCCATATATGAAATCGGAGCCTATCCCGGAAAAAAACAATGAGCCAGTGAAAGTGGTCGTTCACGACAGCATCCAGGACGTAGTTTTCAACTCTGGAAAGAATGTTTTTCTCAAATTCTACGCTCCATGGTGCGGACACTGCAAAAGTCTAGCTCCCATCATCGAGGAAGTTGCTATCTCGTATGAAACCGATGCAGACGTCATCGTTGCCAAGCTTGATGCTACTAGCAATGACTTCCCAACTGAGACATTCAATGTCAATGGCTTTCCTACCTTGTACTTTGTATCAGCGAGCGGGAAAGTGTCGGAATTCGATGGAGAAAGAACCAAAGAAGCTATCGTAGATTTCATCGAAAAGAATCGAGATGTAATCGCTGAGAAAGAACATATCGATAACACGAAGAACGATCAGATTGATTTCGAAGCAAAGGACGAACTTTGA 1554 43.56 PAMASLSSFFCFFIAFSLFVSSFTAISAQESESESVAESKEFVLSLDHSNFYDTVGKHDFIVVEFFAPWCGHCKNLAPEYEKAASILSSHDPPLILAKVDASDEANSDLANEFEVSGLPTIKILKNGGKIIQDYKGPHEADGIVSYLKKQRGPASVEIKSTENATNLIGDDEKIVGIFRQFSGEEFENYTAIAEKLRSDYDFGHTSDAKVLPRGEASVTGPVVRIFKPFDELFVDFEDFDMDAVEKFIEESNVPVVTVFDNDTSKHRYVMKFFENEKDDKAMLFYNFSTELALSFESNFRKLAEQYKGKGIYFLIGDLDPSEGALQYFGIKDDQVPAIVIHTNSGRKYMKPNVYPDQIAQWFKEYEAGHLLPYMKSEPIPEKNNEPVKVVVHDSIQDVVFNSGKNVFLKFYAPWCGHCKSLAPIIEEVAISYETDADVIVAKLDATSNDFPTETFNVNGFPTLYFVSASGKVSEFDGERTKEAIVDFIEKNRDVIAEKEHIDNTKNDQIDFEAKDEL 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2311589 2314874 + Bma014673.1 Bma02g00216 77466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00216 517 Pfam Thioredoxin-like domain 178 363 - -
Bma02g00216 517 Gene3D Glutaredoxin 382 495 - -
Bma02g00216 517 Gene3D Glutaredoxin 142 245 - -
Bma02g00216 517 Gene3D Glutaredoxin 26 141 - -
Bma02g00216 517 TIGRFAM ER_PDI_fam: protein disulfide isomerase 43 517 IPR005792 GO:0003756
Bma02g00216 517 ProSiteProfiles Thioredoxin domain profile. 14 152 IPR013766 -
Bma02g00216 517 PANTHER PROTEIN DISULFIDE ISOMERASE 24 508 - -
Bma02g00216 517 SUPERFAMILY Thioredoxin-like 43 153 IPR036249 -
Bma02g00216 517 CDD PDI_b_family 155 250 - -
Bma02g00216 517 SUPERFAMILY Thioredoxin-like 156 254 IPR036249 -
Bma02g00216 517 Gene3D Glutaredoxin 246 381 - -
Bma02g00216 517 ProSiteProfiles Thioredoxin domain profile. 365 493 IPR013766 -
Bma02g00216 517 PRINTS Thioredoxin family signature 61 69 - -
Bma02g00216 517 PRINTS Thioredoxin family signature 69 78 - -
Bma02g00216 517 PRINTS Thioredoxin family signature 114 125 - -
Bma02g00216 517 ProSitePatterns Thioredoxin family active site. 407 425 IPR017937 -
Bma02g00216 517 CDD PDI_a_PDI_a'_C 386 488 - -
Bma02g00216 517 PANTHER PROTEIN DISULFIDE-ISOMERASE 24 508 - -
Bma02g00216 517 ProSitePatterns Thioredoxin family active site. 62 80 IPR017937 -
Bma02g00216 517 CDD PDI_a_family 44 147 - -
Bma02g00216 517 SUPERFAMILY Thioredoxin-like 251 384 IPR036249 -
Bma02g00216 517 Pfam Thioredoxin 388 490 IPR013766 -
Bma02g00216 517 Pfam Thioredoxin 43 149 IPR013766 -
Bma02g00216 517 SUPERFAMILY Thioredoxin-like 353 491 IPR036249 -
Bma02g00216 517 CDD PDI_b'_family 268 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00216 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - nnu:104605783 677.552
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02074 Bma02g00216 CCT
Bma01g02074 Bma02g00216 ECH
Bma01g00810 Bma02g00216 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00190 Bma-Chr2:1744462 Bma02g00216 Bma-Chr2:2311589 1.65E-09 dispersed
Bma02g00216 Bma-Chr2:2311589 Bma14g00461 Bma-Chr14:5271393 4.00E-58 dispersed
Bma01g02074 Bma-Chr1:76166100 Bma02g00216 Bma-Chr2:2311589 0 transposed
Bma01g00810 Bma-Chr1:7594493 Bma02g00216 Bma-Chr2:2311589 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003308 0 2 2 3 3 1 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00216 Bma_Chr02 FPKM 16.086149 16.974623 38.79068 39.146038 4.057945 5.370592 4.684074 59.982792 59.833397 59.3363