Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00224 TCGATCTTGATGTCACTGATCTTGTTAGGTGCAATAAAATCCAAGCGATCCATATGGCGGCTCAAAACTTTGACCGATTTCTTCTGGGCAATTGCTAACATCATTGGAGTGTTCTTTTCCACTATGTTCTCGATGGAGAAATCAGATGCTTACAGAAAAGGCTCTGGTGCTGGAAAGAAATGGGACAGTGGTGGTCCAGGAGGTCCAAGAGGAGGGCCATATGGTGGGGCTCGTGGTCCTCCTCGAGGGCTGGATAATGTTAGAGGAATTGATCATAGTTCCTTGCCTGCATGCGGCTCCTGCTGTGGCTAA 312 48.08 SILMSLILLGAIKSKRSIWRLKTLTDFFWAIANIIGVFFSTMFSMEKSDAYRKGSGAGKKWDSGGPGGPRGGPYGGARGPPRGLDNVRGIDHSSLPACGSCCG 103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2372591 2373072 + Bma014680.1 Bma02g00224 77474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00224 103 MobiDBLite consensus disorder prediction 51 103 - -
Bma02g00224 103 PANTHER SELENOPROTEIN K 7 103 IPR024491 -
Bma02g00224 103 Pfam Selenoprotein SelK_SelG 10 81 IPR024491 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00224 - - - rcn:112173757 160.999
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00829 Bma-Chr1:7799858 Bma02g00224 Bma-Chr2:2372591 6.88E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g302 . . . . . . . . Cmo04g02457 Cmo15g00710 . . . . . . . . . . . . . . Cla08g00562 Cam08g0979 Cec08g0569 Cco08g0678 Clacu08g0686 . Cre08g0501 . . . Cone20ag0454 . . . . . . . Bda13g01487 . . . Bma02g00224 . . . . . . Car15g00640 Cpe01g02037 . . . . . . . . . . . . . . . Lsi08g00411 . Chy03g00354 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007179 1 1 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00224 Bma_Chr02 FPKM 19.19524 25.527122 22.145716 16.766937 13.811858 14.964565 11.929099 33.786446 46.546753 41.85638