Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00227 TTTTATGGAATATTTTCCATCTTAGCAGGAACAACACTCTCCGAGTGTGCAAGAGTGTTCACCATAATCAACAACTGCCAAGAGACAATATGGCCGGCAATTACTCCCGGGGAAAATTTCAACGGCGGTGGCTTTCAGCTAAAATCCCGCCAGTCCATCGTCCTGACCGCCCCAGTCGGCTGGTCCGGTCGGATATGGGGTCGGACTGGTTGCAACTTCGATAAAAACGGTAATGGCACTTGCCAAACCGGCTCCTGCGGCTCTTCCCTCAAGTGCAGAGCATCCGGCGAACCTCCGGCTTCTCTCGCCGAGTTCACTCTCGCTGCTTTGGATTTCTACGACGTCAGCCTCGTCGACGGCTTCAACTTACCCATATCCGTGACTCCCATTAATGGCAAAGGAAACTGCAGCGTCGCCGGGTGTGATAGCGATCTAAGAACCAATTGTCCGAAGGAACTTTCAGTGAAATCAGGGGACAAAACCGTAGCTTGCCGGAGCGCCTGCGATGTTTTCAACACCGACAACTATTGCTGCAGAGGGGTATTCGGAAACCCTTCAACTTGTCAGCCGACGTATTATTCGAAGACATTTAAGGAGGCTTGTCCGACTGCGTATAGCTACGCTTATGACGATCCGACCAGTATCCTCACTTGCTCCGGCACCGATTACATCATCAATTTCTGCTCTTCCAGGCAACAACCTGCGTGCACTTACCATAACAACAAGCTTGTTTGCAGCGGATCAAATGGATTAAATTCCTTGATAGGAAGAAGATGGTGGTCTGTGATCGCTGCATTATTACTCTTTCTCACTCCGTGGATTTATTAA 828 49.76 FYGIFSILAGTTLSECARVFTIINNCQETIWPAITPGENFNGGGFQLKSRQSIVLTAPVGWSGRIWGRTGCNFDKNGNGTCQTGSCGSSLKCRASGEPPASLAEFTLAALDFYDVSLVDGFNLPISVTPINGKGNCSVAGCDSDLRTNCPKELSVKSGDKTVACRSACDVFNTDNYCCRGVFGNPSTCQPTYYSKTFKEACPTAYSYAYDDPTSILTCSGTDYIINFCSSRQQPACTYHNNKLVCSGSNGLNSLIGRRWWSVIAALLLFLTPWIY 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2387002 2387910 + Bma014683.1 Bma02g00227 77477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00227 275 PIRSF PR5 2 271 IPR001938 -
Bma02g00227 275 ProSiteProfiles Thaumatin family profile. 17 228 IPR001938 -
Bma02g00227 275 PANTHER OS03G0233200 PROTEIN 5 242 IPR001938 -
Bma02g00227 275 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 5 242 - -
Bma02g00227 275 SUPERFAMILY Osmotin, thaumatin-like protein 19 229 IPR037176 -
Bma02g00227 275 Pfam Thaumatin family 24 228 IPR001938 -
Bma02g00227 275 PRINTS Pathogenesis-related protein signature 111 127 IPR001938 -
Bma02g00227 275 PRINTS Pathogenesis-related protein signature 43 52 IPR001938 -
Bma02g00227 275 PRINTS Pathogenesis-related protein signature 64 75 IPR001938 -
Bma02g00227 275 PRINTS Pathogenesis-related protein signature 19 31 IPR001938 -
Bma02g00227 275 PRINTS Pathogenesis-related protein signature 219 228 IPR001938 -
Bma02g00227 275 PRINTS Pathogenesis-related protein signature 77 106 IPR001938 -
Bma02g00227 275 CDD TLP-PA 19 228 - -
Bma02g00227 275 Gene3D Thaumatin 19 228 IPR037176 -
Bma02g00227 275 SMART tha2 20 229 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00227 - - - zju:107421016 463.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00227 Bma-Chr2:2387002 Bma06g00093 Bma-Chr6:1413130 1.92E-77 dispersed
Bma05g00811 Bma-Chr5:45430818 Bma02g00227 Bma-Chr2:2387002 3.92E-51 dispersed
Bma07g01535 Bma-Chr7:50890652 Bma02g00227 Bma-Chr2:2387002 7.96E-26 dispersed
Bma02g00227 Bma-Chr2:2387002 Bma05g00106 Bma-Chr5:3341307 1.81E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g310 . . . . . . . . Cmo04g02452 Cmo15g00713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00186 . . Bda13g01491 Bpe02g01628 Bpe14g00373 . Bma02g00227 . . . . . Car04g02271 Car15g00645 Cpe01g02032 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006626 1 1 2 1 2 1 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00227 Bma_Chr02 FPKM 1.681917 2.322889 0.749742 0.901708 5.326129 4.347506 4.171795 0.0 0.0 0.0