Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00228 ATGGAGAAACCTTGGGGTGGTTTCCTATGTCTTTTCAGCACCAAATCTCTCCATATTACTGCTCGACGAGGACAGCTACGTAAGGAGAAGGAAGAAGTTTCTGTGAAGAAGCGTAAGAAAATGAGATATTGTTCTGGTTCGCTTTGTGGTGGCACGAAGGTGATGCAAAGGGCTTTTACAGGAAAAGGGTCGCCGGAGTTTTACAAGAAAAGGGCTTTTAGGGTTTCATCAAGCAACTCCATTGCTGATTCTATCTCTACCAGGTCCATGACATCTCCTCTTTGCAAACGCAACGGCAGTGGTCGGTCTCCTCTTTCCACGTCTTTTTCTTTTTCTTCTTCTGCCTTCTTCTTCTGCAACTTATGCGCCCGCGCCGCATTAATGCGGCGTTGTGATGCAAAGGGCTTTAAGACGGTGATGGATCCCATTCTTGGATACACGAAAGATCTTTCCTTTAGATCAAGCATTTTTCCTTGTCCGATGTGTGGTGAGATTTTCATGAAGTCTGAAAATTTGGAGCTTCATCAGGCTACTAGTCATGCTGTGTCTGAACTAGATCCAGAAGACACAAGCAGAAAGATTGTGGAAATCATAGTCAAATCCAGTTGGATGAAGAAGGAGCCTCCAACCTGCACGATAGAGCGAATTCTCAAAGTCCACAACACCGAAAAAACCATTTCAAATTTCGAAGAACACAGAGACGCCGTTAAAGCGAAAGCAACAAAGCTCCAGAAGAAACACCCCCGCTGCCTAGCCGACGGAAACGAGCTGCTCCGATTCCACTGCACCACCATCGCTTGCTCTCTGGGCGTCAACGGCAGCACCGAACTCTGCCACGCGACTCATCCTCCATGCAGTACCTGCAGCATCATAAGGGGCGGCTTCAAGGCGGCGGAAAAGGGTATTCTGACGACGGCCACAAGTGGAGCGGCGGATGATAGAGCAGGGGAGGCGGTGGAGGGGAACGAGAAGAGGGCGATGATGGTCTGTAGGGTGGTGGCCGGGAGGGTGAAGAGGAGCGTGGAAGCGGGGATGGAGTATGACTCAGTGAGTGGAGGGGTTGGAGTTTATTCTAGTTTGGACGAGTTGTATGTTTTCAATCCCAAGGCTATATTGCCTTGCTTTGTTGTTATTTATGAAGGGCTTAATGCTTAA 1155 48.66 MEKPWGGFLCLFSTKSLHITARRGQLRKEKEEVSVKKRKKMRYCSGSLCGGTKVMQRAFTGKGSPEFYKKRAFRVSSSNSIADSISTRSMTSPLCKRNGSGRSPLSTSFSFSSSAFFFCNLCARAALMRRCDAKGFKTVMDPILGYTKDLSFRSSIFPCPMCGEIFMKSENLELHQATSHAVSELDPEDTSRKIVEIIVKSSWMKKEPPTCTIERILKVHNTEKTISNFEEHRDAVKAKATKLQKKHPRCLADGNELLRFHCTTIACSLGVNGSTELCHATHPPCSTCSIIRGGFKAAEKGILTTATSGAADDRAGEAVEGNEKRAMMVCRVVAGRVKRSVEAGMEYDSVSGGVGVYSSLDELYVFNPKAILPCFVVIYEGLNA 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2396807 2398636 - Bma014684.1 Bma02g00228 77478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00228 384 Gene3D - 180 380 - -
Bma02g00228 384 Coils Coil 226 246 - -
Bma02g00228 384 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 32 380 - -
Bma02g00228 384 ProSitePatterns Zinc finger C2H2 type domain signature. 159 180 IPR013087 -
Bma02g00228 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 185 IPR013087 -
Bma02g00228 384 SUPERFAMILY ADP-ribosylation 182 381 - -
Bma02g00228 384 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 32 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00228 Bma-Chr2:2396807 Bma04g00246 Bma-Chr4:2103621 7.77E-86 dispersed
Bma14g00541 Bma-Chr14:5889431 Bma02g00228 Bma-Chr2:2396807 1.26E-65 dispersed
Bma02g00228 Bma-Chr2:2396807 Bma02g00231 Bma-Chr2:2421948 0 proximal
Bma01g00833 Bma-Chr1:7839060 Bma02g00228 Bma-Chr2:2396807 2.77E-162 wgd
Bma01g02640 Bma-Chr1:83911540 Bma02g00228 Bma-Chr2:2396807 1.47E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56853 None None None None Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00228 - - qlo:115960248 392.504