Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00234 ATGGAGGATTTACAGAGGGTTCTAGAAAATGGCGGTCTAATGGTTTCTACACTACAGGAGAAGGGTCGGTGCCTCTTTACCACCAGGGATTTCTATCCAGGAGAAGTTATAATAAGTCAGGAACCTTATGTTTCTGTGCCAAACAACTCAGGAAATGATTCGAGATGTGATAGATGTTTCGTTTCTATTAACCTTAAAAGGTGCTCCGGTTGCCATATTGTATGGTATTGTGGCAGTGGATGTCAGAAGTTGGAATGGAAGTTACATCATCTTGAATGTGGTGCTCTCTCAAGGCTTGACAAGGACAGACGGAAAGCCGTTACTTCATCCTTACGACTAATGCTCAAGCTCATCATTCGGAAAAAGTGTCAAAGTGAAAAGATCCTCCCTACAACCGCAACAGATAACTACAGTCTGCTAGAGGCGCTGGTGGCACATATGTCAAACATTGATGAAAAGCAAATGGTGATGTATGCTCAGATGGGTAATCTTGTGAGTTTGATACTCCAATGGCCTGATCTGAACATTAAAGAAATTGCAGAAAATTTTTCAAAGTTAGCATGTAATGCACATACAATTTGCGATAGCGAACTCAGACCCTTAGGGACTGGACTATATCCAGTGATCTCCATTATTAACCACAGCTGCTTGCCGAATTCTGTTTTGGTATTTGAGGGAAAGACTGCTGTGGTGAGAGCTGTGGCAAAAATACCAAAAGGGGAAGAGGTGTTGATAAGTTACATCGAAACTGCGGCAAGCACCATGGCTCGGCAAAAGGCTCTGGAAGAACAATACTTTTTCAACTGCACCTGTATCCGCTGTGTTAAAGTGGGTCAACCTGATGATATGCAAGAAAGTGCAATTCTTGAAGGTTACAGCTGCAAGAATGAGAAATGCGAGGGTTACTTGCTCCGAGATCACGATGACAAGAGATTTATATGTCAGCAATGCGGGTTTTTTAGAAAAAATGAAGAGATTAAAGACATTGCTGGGGAAATAAAATCATTGACTAACAAGGCTTTCGAGTTTATGACAGGGCGATATTATGAGGACGCTATTTCTGTTCATGAGAAAATTGAAAAACTTCAAAGGAAATTGTGTCATCCCTTTTCAATCAATTTGTTGCAAACTAGAGAAAAGCTTCTAAAGATGTTGATGGAACTAGAAAATTGGAGAGAAGCTCTCAAATATTGTAGATTGACCATTCCTGCATACCATAGGATGTACCCTGGATTTCACCCTCTGCTTGGACTGCAATATTATACGTGCGGGAAACTAGAATGGCTCTTGGGAGATACAGAGGATGCTGTGAGAGATCTCACCATGGCCACTGATATTCTGCGTGTCACGCACGGGACAGAGACAAGTTTTATGAAAGAACTAATAATTAAGTTGGAGGAAGCTCGGGCTGAATCTTCGTATAAACACTCACCTAGCAATGAGTAG 1446 41.49 MEDLQRVLENGGLMVSTLQEKGRCLFTTRDFYPGEVIISQEPYVSVPNNSGNDSRCDRCFVSINLKRCSGCHIVWYCGSGCQKLEWKLHHLECGALSRLDKDRRKAVTSSLRLMLKLIIRKKCQSEKILPTTATDNYSLLEALVAHMSNIDEKQMVMYAQMGNLVSLILQWPDLNIKEIAENFSKLACNAHTICDSELRPLGTGLYPVISIINHSCLPNSVLVFEGKTAVVRAVAKIPKGEEVLISYIETAASTMARQKALEEQYFFNCTCIRCVKVGQPDDMQESAILEGYSCKNEKCEGYLLRDHDDKRFICQQCGFFRKNEEIKDIAGEIKSLTNKAFEFMTGRYYEDAISVHEKIEKLQRKLCHPFSINLLQTREKLLKMLMELENWREALKYCRLTIPAYHRMYPGFHPLLGLQYYTCGKLEWLLGDTEDAVRDLTMATDILRVTHGTETSFMKELIIKLEEARAESSYKHSPSNE 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2440212 2446136 - Bma014690.1 Bma02g00234 77484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00234 481 Gene3D Tetratricopeptide repeat domain 401 478 IPR011990 GO:0005515
Bma02g00234 481 SUPERFAMILY TPR-like 334 446 IPR011990 GO:0005515
Bma02g00234 481 ProSitePatterns Zinc finger MYND-type signature. 56 93 IPR002893 -
Bma02g00234 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 472 - -
Bma02g00234 481 ProSiteProfiles Zinc finger MYND-type profile. 56 93 IPR002893 -
Bma02g00234 481 Pfam MYND finger 56 93 IPR002893 -
Bma02g00234 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 472 - -
Bma02g00234 481 ProSiteProfiles SET domain profile. 11 248 IPR001214 GO:0005515
Bma02g00234 481 SUPERFAMILY SET domain 10 247 IPR046341 -
Bma02g00234 481 SMART set_7 11 254 IPR001214 GO:0005515
Bma02g00234 481 Pfam SET domain 22 247 IPR001214 GO:0005515
Bma02g00234 481 Gene3D - 55 105 - -
Bma02g00234 481 Gene3D - 106 190 - -
Bma02g00234 481 Gene3D SET domain 24 274 IPR046341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00234 K11426 SMYD; [histone H3]-lysine4/36 N-trimethyltransferase SMYD [EC:2.1.1.354 2.1.1.357] - csin:114289150 709.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00234 Bma-Chr2:2440212 Bma03g01467 Bma-Chr3:42823742 6.48E-11 dispersed
Bma02g00230 Bma-Chr2:2405041 Bma02g00234 Bma-Chr2:2440212 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g318 . . . . . . . . . Cmo15g00718 . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0461 . . . . Blo17g00189 . . Bda13g01493 . Bpe14g00371 . Bma02g00234 . . . . . . Car15g00650 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005114 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 8 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56856 PF00856 SET 1.80E-15 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00234 Bma_Chr02 FPKM 29.699053 33.93412 91.131119 83.945381 59.333534 71.621239 52.663559 18.149818 17.470827 15.631123