Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00239 ATGGTCCGCCTCACAGGGAAACACCCCTTCAATTCGGAGGCTCCATTAACCCGATTAATGAACCACGGCTTTATCACTCCGGTGCCTCTCCACTACGTCAGAAACCACGGCGCCGTTCCGAAGGCCAACTGGGAAACCTGGACCGTCGAGGTCTCCGGCCTCGTCAAACGGCCGACCAAATTCACGATGGATCAGCTGGTCAACGAGTTCCCTTCCAGAGAATTCCCGGTGACCCTCGTCTGCGCCGGAAACCGACGGAAGGAGCAGAACATGGTCAAGCAAACCATCGGTTTCAACTGGGGGGCGGCAGGCGTCTCCACCTCCGTGTGGCGCGGGGTTCCGTTGCTTTACGTCCTCAAAAAATGTGGCATCTTCAGCAGAAAAAACGGCGGTCTCAATGTCTGCTTCGAAGGCGCCGAGGACTTACCCGGCGGCGGTGGGTCAAAGTACGGTACGAGCATCAAAACAGAATTCGCTATGGATCCGTCTAGAGACATCATTTTAGCTTACATGCAAAACGGCGAGAGATTGGCGCCGGACCACGGCTTCCCAGTAAGAATGATAATCCCAGGATTCATCGGCGGCCGGATGGTTAAATGGCTCAAACGAATCATCGTCACTACCAAAGAATCGGAAAACCATTACCACTACAAAGATAATCGAGTTCTTCCTTCCAACGTCGACGCAGAGCTAGCGAACGCACAAGGTTGGTGGTTCAAGCCAGAGTATATAATAAACGAGTTGAACATAAACTCAGTCATAACGACGCCATGCCATGAAGAGATCTTGCCCTTAAATTCATGGACGACTCAGAGACCTTACACTTTGAGGGGATATGCTTATTCCGGTGGAGGGAAGAAAGTGACACGTGTGGAGGTGACAATGGACGGTGGAGAGACGTGGCGCGTGTGCACGTTGGACCATCCGGAGAAGGGGAACAAGTACGGGAAGTTCTGGTGCTGGTGTTTCTGGTCTCTGGAGGTTGAAGTGCTTGACGTTCTTGCAGCCAAGGAGATAGCGGTTCGAGCTTGGGACGAAACCCACAACACTCAGCCTGAGAAGCTCAACTGGAACGTCATGGGAATGATGAACAACTGCTGGTTCAGAGTGAAGACAAATGTTTGTAGACCACACAAGGGAGAGATCGGAATCGTGTTTGAGCATCCGACTTTGCCCGGAAACCAGTCCGGCGGATGGATGGCCAGAGAAAAACTCCTCGAGATTTCATCGGAAACTAACCAGACCTTGAAGAAGAGCCTCTCCTCCCCCTTTATGAAGACTGCCTCCAAGACTTACTCCATGTCGGAGGTCAAGAAACATAATAACGCTCAGTCGGCTTGGATCATCGTCCACGGCCATATCTATGACTGCACGCGCTTCCTCAAAGACCATCCCGGAGGTTCCGATAGTATTCTCATTAATGCTGGAACCGACTGTACTGAAGAATTCGACGCTATTCATTCCGACAAAGCCAAGAAGCTGCTCGAAGATTACAGAATCGGCGAACTCATCTCCACTGGTTACACCTCCGACTCCTCGCCTTCTTCTCCCAATAATTCAGTCCACGGTGCTTCCAACATGCCCATCCACTTAGCTCCGATCACTGAAATAGCTCCCACCAAACGGGTCGCCCTTGTTCCGCAAGAAAAAATCCCATGTAAGCTCATTGCCAAGACTTCGCTCTCTCATGACGTTAGGGTTTTCCGATTCGCTTTACCCTCCGATGATCAGCTTCTTGGATTGCCCGTCGGCAAACACATATTTCTCTGTGCCGTCATTGAAGGGAAGCTCTGCATGAGAGCTTACACTCCGACTAGCTCCATTGACGAAGTCGGTTTCTTCGATCTAGTGGTTAAAATCTACTACAAGAACGTTCATCCAAAGTTCCCCAATGGAGGTGTCATGTCTCAGTATCTAGACTCTCTGCAACTCGGTTCGACCCTTGAAATAAAGGGTCCATTAGGCCACATAGAATACACCGGAAGAGGTAACTTCCTCGTCCATAAAAAACCGAAGTTCGCCAAAAAACTCGCCATGCTCGCCGGCGGAACAGGAATCACGCCGATCTATCAGGTAGTTAAAGCCATTTTGAAGGATCCGGAAGACGAAACAGAAATGTTCATCGTCTACGCTAACAGAACGGAAGACGATATTCTCTTAAAAGACGAGCTTGATTCGTGGGCCAAGAAGCACGAGAGATTGAAGGTTTGGTACGTTATTCAAGAGAGCATAAAAGAAGGATGGCAATACGATCTTGGCTTCATCACCGAGGCAATCTTGCGGGAGCATATTCCCGATGGATCAGACGGGGCACTAGCGCTCGCGTGTGGGCCGCCGCCGATGATTCAGTTTGCAGTGCAGCCAAACCTGGAGAAAATGAACTATGATATCAAGAATTCGTTGCTTGTGTTCTAG 2415 50.31 MVRLTGKHPFNSEAPLTRLMNHGFITPVPLHYVRNHGAVPKANWETWTVEVSGLVKRPTKFTMDQLVNEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLLYVLKKCGIFSRKNGGLNVCFEGAEDLPGGGGSKYGTSIKTEFAMDPSRDIILAYMQNGERLAPDHGFPVRMIIPGFIGGRMVKWLKRIIVTTKESENHYHYKDNRVLPSNVDAELANAQGWWFKPEYIINELNINSVITTPCHEEILPLNSWTTQRPYTLRGYAYSGGGKKVTRVEVTMDGGETWRVCTLDHPEKGNKYGKFWCWCFWSLEVEVLDVLAAKEIAVRAWDETHNTQPEKLNWNVMGMMNNCWFRVKTNVCRPHKGEIGIVFEHPTLPGNQSGGWMAREKLLEISSETNQTLKKSLSSPFMKTASKTYSMSEVKKHNNAQSAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFDAIHSDKAKKLLEDYRIGELISTGYTSDSSPSSPNNSVHGASNMPIHLAPITEIAPTKRVALVPQEKIPCKLIAKTSLSHDVRVFRFALPSDDQLLGLPVGKHIFLCAVIEGKLCMRAYTPTSSIDEVGFFDLVVKIYYKNVHPKFPNGGVMSQYLDSLQLGSTLEIKGPLGHIEYTGRGNFLVHKKPKFAKKLAMLAGGTGITPIYQVVKAILKDPEDETEMFIVYANRTEDDILLKDELDSWAKKHERLKVWYVIQESIKEGWQYDLGFITEAILREHIPDGSDGALALACGPPPMIQFAVQPNLEKMNYDIKNSLLVF 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2504027 2507243 - Bma014694.1 Bma02g00239 77489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00239 804 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 3 245 IPR036374 -
Bma02g00239 804 Gene3D - 6 246 IPR036374 -
Bma02g00239 804 Gene3D - 655 804 IPR039261 -
Bma02g00239 804 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 429 504 IPR001199 -
Bma02g00239 804 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 53 88 IPR022407 GO:0043546
Bma02g00239 804 Gene3D - 424 506 IPR036400 -
Bma02g00239 804 Pfam Cytochrome b5-like Heme/Steroid binding domain 434 503 IPR001199 -
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 103 118 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 317 327 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 178 191 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 88 100 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 276 290 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 24 40 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 77 88 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 290 302 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 342 354 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 2 16 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 194 207 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 245 257 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 355 368 IPR008335 GO:0016491
Bma02g00239 804 PRINTS Eukaryotic molybdopterin domain signature 161 177 IPR008335 GO:0016491
Bma02g00239 804 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 460 467 IPR018506 GO:0020037
Bma02g00239 804 PRINTS Cytochrome B5 signature 491 503 IPR001199 -
Bma02g00239 804 PRINTS Cytochrome B5 signature 454 464 IPR001199 -
Bma02g00239 804 PRINTS Cytochrome B5 signature 479 486 IPR001199 -
Bma02g00239 804 PRINTS Cytochrome B5 signature 464 478 IPR001199 -
Bma02g00239 804 PANTHER NITRATE REDUCTASE 1 804 - -
Bma02g00239 804 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 463 473 IPR001709 GO:0016491
Bma02g00239 804 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 600 607 IPR001709 GO:0016491
Bma02g00239 804 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 678 697 IPR001709 GO:0016491
Bma02g00239 804 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 632 641 IPR001709 GO:0016491
Bma02g00239 804 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 772 780 IPR001709 GO:0016491
Bma02g00239 804 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 704 713 IPR001709 GO:0016491
Bma02g00239 804 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 716 727 IPR001709 GO:0016491
Bma02g00239 804 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 748 764 IPR001709 GO:0016491
Bma02g00239 804 CDD eukary_NR_Moco 1 372 - -
Bma02g00239 804 SUPERFAMILY Riboflavin synthase domain-like 543 660 IPR017938 -
Bma02g00239 804 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 548 660 IPR017927 GO:0016491
Bma02g00239 804 Pfam Oxidoreductase NAD-binding domain 679 786 IPR001433 GO:0016491
Bma02g00239 804 Gene3D - 247 422 - -
Bma02g00239 804 Pfam Oxidoreductase FAD-binding domain 553 659 IPR008333 -
Bma02g00239 804 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 647 797 IPR039261 -
Bma02g00239 804 SMART Cyt_b5_2 432 504 IPR001199 -
Bma02g00239 804 PANTHER NADH-CYTOCHROME B5 REDUCTASE 1 804 IPR001834 GO:0016491
Bma02g00239 804 SUPERFAMILY E set domains 247 374 IPR014756 -
Bma02g00239 804 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 428 507 IPR036400 -
Bma02g00239 804 Pfam Mo-co oxidoreductase dimerisation domain 243 374 IPR005066 GO:0016491|GO:0030151
Bma02g00239 804 CDD cyt_b5_reduct_like 553 799 - -
Bma02g00239 804 PRINTS Cytochrome B5 reductase signature 678 697 - -
Bma02g00239 804 PRINTS Cytochrome B5 reductase signature 579 590 - -
Bma02g00239 804 PRINTS Cytochrome B5 reductase signature 645 659 - -
Bma02g00239 804 PRINTS Cytochrome B5 reductase signature 772 780 - -
Bma02g00239 804 PRINTS Cytochrome B5 reductase signature 716 727 - -
Bma02g00239 804 PRINTS Cytochrome B5 reductase signature 600 607 - -
Bma02g00239 804 Pfam Oxidoreductase molybdopterin binding domain 36 215 IPR000572 -
Bma02g00239 804 Gene3D Translation factors 540 654 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00239 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - pvy:116131487 1474.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00839 Bma02g00239 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00239 Bma-Chr2:2504027 Bma13g00579 Bma-Chr13:12383191 1.78E-58 dispersed
Bma01g00839 Bma-Chr1:7935673 Bma02g00239 Bma-Chr2:2504027 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00239 Bma_Chr02 FPKM 48.621372 56.541828 37.411938 36.294724 61.78199 59.69693 61.327698 26.632706 27.34585 27.683903