Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00243 ATGACTCGTGGCCGATGTCACCGGCGGAAGAAAATGATGGGTAGGGGTGCGGACGGAGGTTGCGGCACTGAGGAACGGCCTTGCCCAGTTTCTAGGGTTCCGGCGAGAATTCCGGGGTCTCAGCCGGGAATTGCCGACGGTGGTGCTTCTGTGTGCATTGATTTACTCTCGCAAGCGACTAAGATTCTGTCTGAGAGCTCGCCGTTTGATGTTGCTGACGAAACTTCAGCTTCCACAGTGCCCACTTTACCAATTGGATTAGCCAACTTTTTAACGAGGCAGTCGGATAGTAGAAAACGGCATAAGAAGTCTCATCCGGCAGACGTCAAAAAGTCGGCTGTTGAGAAGTCTCGTAGTACTAGTTTTTGGACTGAATGTGACGATTACTTTAGGGACGTCACATTGCATGATGTAGCCACGTTGTCTGAGATATCTTCTCCCAAAGACTTCGCCAATAGGAAGTGTTTTTGGATTCCAGTTTCTGCAAATTCTTCTCAGGCAGGCGCTGATAATGGTGAGAATGCCAGTGTTGAAGATACTAGTGAGTCTTTTGTCAATGAGGAGCTTACGAATGGTAATCAGCTTGATGTGGAAAGTGATGCCGTAACAGTTGGTAATTTATTTCGACAGGTTGCTGAATGTGTTGATTCGGATTTGTCCCACGGCTTAGAGTGGCTTTTAGGTTGTCGAAATAAGGTATCTTTAACTTCAGAACGCCCTTCAAAGAAGCGGAAGCTTTTGGGTACAGATGCAGGCTTGGAGAAACTTTTGGTTGTCTGTCCATGTGAAGGAAATTTATCTTTATGCCACTTTTGCTCTAAAGCTGATACAGGGAAGAAGTTCAATCGACTAATAGTTTGTAGTAATTGCAAGTTGAATATACACCAGAAGTGCTATGGGGTGCAAGATATTGATGGATCATGGCAATGTTCTTGGTGTACTCGAAAAGATAATAGCAGTGATTATCCGATGCATTGTGTACTTTGTCCGAAGTTGAATGGCGCTTTGAAACCTGTTCATAGTAACGGTGAAAATGGAGGCCCTACAAAGTTTGCACATTTGTTTTGTAGCCTGTGGATGCCAGAAGTTTACATTGAGGACGTCACACAGATGGAACCTATTATGAACGTGGGAGGTATAAAAGAAACCCGGGGAAGATTAGTCTGTAACATTTGCAAAGTAAAACACGGGGCTTGTCTTCAGTGCAGTCGTGGAACTTGTCGAACGTCTTTCCATCCTATATGTGCTAGGGAGGCTAGCCACAGAATGGAAATATGGGGAAGAGATGGGTCTGACAATGTTGAACTCCGGGCATTTTGCTCTAAGCACTCAAAAGTGGAGAATGCTGACAGTCCACAAGTAGAAGATCCTTCAGAACCCGTTCTCAATGATTCTCTTGTTGTCAAACACCTTCCAGTGACTCTGTCAATTAACAGACCTCAAAAGTTGGTGATTGGTCGAAGAAATGGAGATAATATGTCAGCCTGTGTGGATTCTTTGGATGAAAATTCTGAAAAATCTGTTGATAGTGATTCACTAGAGATGGAATTTTCAGATTCCAAATTTCTTCCTGGACTTGCATCTGATCGTTTATCACAAACTGTGCAGTTAATTGACCGAGGAAAAGTCGATGTGAACGACGTCGCGGTGCAGATTGGTGTATCACCCGATACATTGATCTCAAAACTTACTGGTAAAAACTTGTCTCCAGACCTAGGGTCCAAAATAGTTAATTGGCTTCAAAATCATGCTTTTATGGGTACCTTGCAAAAAAATAGGAAACTGAGAATGAAATCTGCTGCTTTATCCAAGGCAACGGATGCAGCTGTTGATAAGCCTAGTGCATTACAAGGGCCTGAGTCTGATGTTCCGGATCCAGTCGATGTTATGTCGGTTGTGCCACTGAGAAGAACCAAAAGCGACATGAGAGTTTTGAAAGATGAGCAAGTAACTGGCTCGTCGGAGGAACTCTTAGGTGATCATGAGTTGGCGATAGAAGATGTTTGCATGAATCAACATGCAAGTGAAGAACCAGAAAATTTGAGTAAGTATTGCATTGTAGAGTCAGAATTCTCAGGGAAACTTTCAGAAGGAGATCGAATTGGGGAGCTTGTTGTTACAACCCCCAATTTTTCATTGAGTGCAGATTGGGAAAATGTTATTCCTGGAGAAGTGAAACCTGCTATCAGTGATACGGTGAAACCAGGTGGATCTTCTAGTTTTTACATTCACCCATATATACAACATAAATTGTTGCAAGTTCAGAGAGGGTCACATCTGAAGAATGCAGTACTAGATTCTGCTGGTAAGGTATGTTCTGTGGGTGACACTAAAATGTGTCTTTCAGAATCATCATCAAGTGTCAGTTTAATTCACCAAAATCATCACTCGTGCAATGGCTTTGACTTGAAATCTAATGGATCAATTGTGGACCAGTTGGCAAAGGCTAGGGAAATGGACGTTCTAAAATTTTCGCCCAAAGATGAATTGGAAGGAGAAATCATTTACTATCAGAATAGATTACTTGGCAACGCAGAAGCAAGAAAGAAGTTAACTGAACGCTTAACTTTTAATGTAACTAAGAGTCTGCCAATGGAGATTGATACTGCAAGAAGTCGAATATGGGAGGTGGTTCTTGTTAACCGATATCTTTCTCAGCTTAGGGAGGCAAAGAAACAAGGCAAGAAAGAGAGAAAACATAAGGAGGCACAGGCTGTCTTGGCTGCTGCAACTGCTGCTGCTGCAAATTCTTCGAGGTCATCTCAGAGAAAAGATGTTTTTGAAGAATCTGCTCATCTGGAGCTGATGCCCCAAGCCAAAGAAGCACTTTCAACGGTTGCTCTGCCTAAGCTTTCATCAGACAAGCAATCAGAATTTGTTCAATCCATCTCTGGATCTTCCAAAGATCATCCTCGATCATGCGATATCTGTAGACGTCCTGAGTCTATATTGAAGCCAATCTTAGTCTGTTCCAGTTGCAAGGTTGCAGTTCACTTGGACTGCTATTGTAGTGTTAAAGAGTCTTCAGGACCTTGGAATTGTGAATTATGTGAGGACTTATCGGCATCCAGAGGTTCTGGAGGATCGACTATTAATTTTTGGGAGAAATCAAATTTTCTTGCGGAGTGTGGTTTATGTGGTGGCACCACTGGTGCTTTCCGGAAATCAACTGGTGGACAATGGGTCCATGCCTTTTGTGCTGAGTGGGTCCTGGAGTCAACATTCAGAAGGGGACAGACAAATTCTGTGGAAGGAATGGAGACTGTTTTAACTGGAGTTGATATTTGCTATGTCTGTTGTCGCAAACATGGCGTCTGCATAAAGTGCAACTACGGTCATTGTCAGTCTACTTTCCATCCTTCCTGTGCTAGGACCGCGGGTCTCTTCATGAATATAAAAACTTCTGGTGGCAAGGTGCAGCACAAAGCTTACTGTGAAAAGCATAGCTCAGAGCAGAGGGCAAAGATTGTTCTTGTACAGGTTGAGTTAGAAAGGTTACGCCTTCTTTGTGAGAGGATCATCAAGCGTGAAAAGATAAAGCGCGACTTGGTTCTTTGTTCACATGACATTTTTATTTTCAAAAGAGACCACGCAGCAGGGGCTGCAATTGGACGTAATCCTCGTATCAATCATGAGGTTAGCACTGAATCGGCCACAACATCTCTGAGGGGACAAACAGATGATTTCAAATCCCGCAGTGATGCTGTCCAGAGATCAGATGATACAACTGTGGACAGCTCGGTTTCAGTCAAGCGGAGGACAAAAGTTCCTATCTCAGTAGACACAGACCAAAAGACAGATGACGACAGTTCCACATCCAAAAACCCTTTTGCTCGAAAAAATTTAGGGAGGCCTCAATTTTCAGGTAAGCAGATTCCTAACAGAAGACCTTCAGCTGCAGATGGAGGACATCGGTTAAGATCTAGAAAGTCCGAAACTTTTCAAAAGGAGTTGTTGATGACTTCAGATCAAGCATCAATGAAGAACTCACTCTTACCAAAACAGTATCTATATGTTCCTGCTGATATGCTTGCTAAGGAGAAGCAGATTGGCCAGGATGATGCTGCTCAAAAGCCAGCAGAAAGGGATGGATAA 4095 43.22 MTRGRCHRRKKMMGRGADGGCGTEERPCPVSRVPARIPGSQPGIADGGASVCIDLLSQATKILSESSPFDVADETSASTVPTLPIGLANFLTRQSDSRKRHKKSHPADVKKSAVEKSRSTSFWTECDDYFRDVTLHDVATLSEISSPKDFANRKCFWIPVSANSSQAGADNGENASVEDTSESFVNEELTNGNQLDVESDAVTVGNLFRQVAECVDSDLSHGLEWLLGCRNKVSLTSERPSKKRKLLGTDAGLEKLLVVCPCEGNLSLCHFCSKADTGKKFNRLIVCSNCKLNIHQKCYGVQDIDGSWQCSWCTRKDNSSDYPMHCVLCPKLNGALKPVHSNGENGGPTKFAHLFCSLWMPEVYIEDVTQMEPIMNVGGIKETRGRLVCNICKVKHGACLQCSRGTCRTSFHPICAREASHRMEIWGRDGSDNVELRAFCSKHSKVENADSPQVEDPSEPVLNDSLVVKHLPVTLSINRPQKLVIGRRNGDNMSACVDSLDENSEKSVDSDSLEMEFSDSKFLPGLASDRLSQTVQLIDRGKVDVNDVAVQIGVSPDTLISKLTGKNLSPDLGSKIVNWLQNHAFMGTLQKNRKLRMKSAALSKATDAAVDKPSALQGPESDVPDPVDVMSVVPLRRTKSDMRVLKDEQVTGSSEELLGDHELAIEDVCMNQHASEEPENLSKYCIVESEFSGKLSEGDRIGELVVTTPNFSLSADWENVIPGEVKPAISDTVKPGGSSSFYIHPYIQHKLLQVQRGSHLKNAVLDSAGKVCSVGDTKMCLSESSSSVSLIHQNHHSCNGFDLKSNGSIVDQLAKAREMDVLKFSPKDELEGEIIYYQNRLLGNAEARKKLTERLTFNVTKSLPMEIDTARSRIWEVVLVNRYLSQLREAKKQGKKERKHKEAQAVLAAATAAAANSSRSSQRKDVFEESAHLELMPQAKEALSTVALPKLSSDKQSEFVQSISGSSKDHPRSCDICRRPESILKPILVCSSCKVAVHLDCYCSVKESSGPWNCELCEDLSASRGSGGSTINFWEKSNFLAECGLCGGTTGAFRKSTGGQWVHAFCAEWVLESTFRRGQTNSVEGMETVLTGVDICYVCCRKHGVCIKCNYGHCQSTFHPSCARTAGLFMNIKTSGGKVQHKAYCEKHSSEQRAKIVLVQVELERLRLLCERIIKREKIKRDLVLCSHDIFIFKRDHAAGAAIGRNPRINHEVSTESATTSLRGQTDDFKSRSDAVQRSDDTTVDSSVSVKRRTKVPISVDTDQKTDDDSSTSKNPFARKNLGRPQFSGKQIPNRRPSAADGGHRLRSRKSETFQKELLMTSDQASMKNSLLPKQYLYVPADMLAKEKQIGQDDAAQKPAERDG 1364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2564420 2572913 + Bma014699.1 Bma02g00243 77493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00243 1364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 446 IPR013083 -
Bma02g00243 1364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1039 1151 IPR013083 -
Bma02g00243 1364 Pfam PHD-zinc-finger like domain 325 443 - -
Bma02g00243 1364 Pfam PHD-zinc-finger like domain 1042 1148 - -
Bma02g00243 1364 ProSiteProfiles Zinc finger PHD-type profile. 266 316 IPR019787 -
Bma02g00243 1364 SUPERFAMILY FYVE/PHD zinc finger 966 1018 IPR011011 -
Bma02g00243 1364 MobiDBLite consensus disorder prediction 1210 1226 - -
Bma02g00243 1364 SUPERFAMILY FYVE/PHD zinc finger 262 332 IPR011011 -
Bma02g00243 1364 MobiDBLite consensus disorder prediction 94 114 - -
Bma02g00243 1364 MobiDBLite consensus disorder prediction 1 23 - -
Bma02g00243 1364 SMART PHD_3 1095 1149 IPR001965 -
Bma02g00243 1364 SMART PHD_3 973 1018 IPR001965 -
Bma02g00243 1364 SMART PHD_3 388 444 IPR001965 -
Bma02g00243 1364 SMART PHD_3 268 314 IPR001965 -
Bma02g00243 1364 MobiDBLite consensus disorder prediction 1256 1274 - -
Bma02g00243 1364 CDD ePHD 1043 1148 - -
Bma02g00243 1364 ProSiteProfiles Extended PHD (ePHD) domain profile. 1040 1149 IPR034732 -
Bma02g00243 1364 ProSiteProfiles Zinc finger PHD-type profile. 971 1020 IPR019787 -
Bma02g00243 1364 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 216 1359 - -
Bma02g00243 1364 Coils Coil 884 904 - -
Bma02g00243 1364 ProSiteProfiles Extended PHD (ePHD) domain profile. 323 444 IPR034732 -
Bma02g00243 1364 MobiDBLite consensus disorder prediction 1210 1311 - -
Bma02g00243 1364 Pfam PHD-finger 986 1018 - -
Bma02g00243 1364 Pfam PHD-finger 282 314 - -
Bma02g00243 1364 ProSitePatterns Zinc finger PHD-type signature. 974 1017 IPR019786 -
Bma02g00243 1364 CDD PHD_SF 973 1017 - -
Bma02g00243 1364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 950 1025 IPR013083 -
Bma02g00243 1364 PANTHER PHD FINGER PROTEINS 216 1359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00243 - - - csv:101212864 1380.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00243 Bma-Chr2:2564420 Bma05g00980 Bma-Chr5:48277327 1.13E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g332 . . . . . . . . Cmo04g02429 . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1260 Cone20ag0468 . . . . Blo17g00200 . . Bda13g01503 . Bpe14g00362 . Bma02g00243 . . . . . Car04g02243 Car15g00662 Cpe01g02018 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003906 1 3 1 1 1 2 2 2 1 1 1 1 2 1 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00243 Bma_Chr02 FPKM 8.573033 9.199223 93.730324 96.137405 17.407116 12.409905 14.383536 35.349163 35.299 35.498169