Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00245 ATGGAGAACTCCGACGTTTTCTTAGGTCTGCATGATTTCCTTGACCGCATGCGTCAACCATCAGCTTCCGAATTCGTCCGGTCTATCAAGAGCTTTGTTGTGTCGTTTTCAAACAATGCTCCTGATCCAGATAAGGATAGTGCAGCTGTGCAGGATTTTTTCGCCAAAATGGAGGCAGCTTTCAGAGCTCATCCACTTTGGTCTGGTTGCTCCGAGGAGGAGCTGGAAAGTGCTGGTGAAGGACTAGAGAAGTATGTAATGACAAAATTATTTCCCCGTGTATTTTCCCCAATCCCGGATGATGTGAAACTGGATGAACAACTATCGGACAAGATAGCTTTGGTTCAACAATTTATTCGACCAGAAAATTTGGATATCCACCCAAACTTTCAAACTGAAACATCATGGCTGCTTGCTCAAAAAGAACTGCAAAAGATCAATATGTATAAAGCACCAAGAGACAAGCTTGTTTGCATCCTAAATTGTTGCAAGGTCATCAACAACTTGCTTCTTAATGTTTCCATGGCATCAAACGAGAATCCTCCTGGTGCTGATGAGTTCCTTCCCGTCCTTATTTACGCAAATCCTCCACAACTGCATTCAAATTTGCTATACATTCAAAGGTATAGGCGTCAGTCTAGATTAGCAGGGGAAACTGCTTATTTTTTCACAAACATGCTGTCTGCTGAGTCCTTTATCTCAAGCATTGACGCAAAAGCCATATCAATGGATGAAGCTGAGTTTGAAAAGAGCATGGAATTCGCTCGATTTGTTCTTTCTGGACTTTCAACTGATGTTGACAGTCAATCAAATCAAAGTGACTTAAATTTGGGGACTGATCGGGGGTCTGAAGCTACCGAAACTAGTTATCAGGCTCTGAATGTTGCAGATAAAAACTCCACTCTACTACATAATTCATCTGAAGACAAATCCAAAGCAGAAGAAGCATCAAATGCTAGAGATGACTTATCAATGGTGAAAACTCCTTCCCTCTCGGATTTGGAGAATAAAGGGGCGAGTATGATTTTGAAGGAAAAATCAGCTGAGCAAATTTTTCGAGACTATCCATTTTTGTTTGCACGTGTTGGAGATTTAACTATCAGTGACGTCGATGAACTTCTCAATCGATATAAGCAGCTGGTTTTCCAGTACGTAAGTCTTTCTAAAGGATTGGGTGTTACTCCATCTACTTCTTTGTCAAATTTACATTTGAAAACACCAAACCATGGCGAGACCTTGACGAAAGATCGAGATTCCAGAGATGATGAGCCAGAAAACAACATTGACGGAAAAACCAATGGCTCAGACCAAGTCTCCCTACCAGGACAGGAAAACTTTGAACAGGGGAGGTAG 1353 41.54 MENSDVFLGLHDFLDRMRQPSASEFVRSIKSFVVSFSNNAPDPDKDSAAVQDFFAKMEAAFRAHPLWSGCSEEELESAGEGLEKYVMTKLFPRVFSPIPDDVKLDEQLSDKIALVQQFIRPENLDIHPNFQTETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNVSMASNENPPGADEFLPVLIYANPPQLHSNLLYIQRYRRQSRLAGETAYFFTNMLSAESFISSIDAKAISMDEAEFEKSMEFARFVLSGLSTDVDSQSNQSDLNLGTDRGSEATETSYQALNVADKNSTLLHNSSEDKSKAEEASNARDDLSMVKTPSLSDLENKGASMILKEKSAEQIFRDYPFLFARVGDLTISDVDELLNRYKQLVFQYVSLSKGLGVTPSTSLSNLHLKTPNHGETLTKDRDSRDDEPENNIDGKTNGSDQVSLPGQENFEQGR 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2575487 2579205 - Bma014701.1 Bma02g00245 77495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00245 450 MobiDBLite consensus disorder prediction 303 330 - -
Bma02g00245 450 MobiDBLite consensus disorder prediction 396 450 - -
Bma02g00245 450 MobiDBLite consensus disorder prediction 409 429 - -
Bma02g00245 450 PANTHER BNAC09G47180D PROTEIN 1 404 - -
Bma02g00245 450 SUPERFAMILY VPS9 domain 11 252 IPR037191 -
Bma02g00245 450 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 237 IPR003123 -
Bma02g00245 450 Gene3D VPS9 domain 99 259 IPR037191 -
Bma02g00245 450 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Bma02g00245 450 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 404 IPR045046 GO:0005085|GO:0016192
Bma02g00245 450 ProSiteProfiles VPS9 domain profile. 102 242 IPR003123 -
Bma02g00245 450 MobiDBLite consensus disorder prediction 303 321 - -
Bma02g00245 450 Gene3D - 17 96 - -
Bma02g00245 450 SMART vps9_2 135 250 IPR003123 -
Bma02g00245 450 MobiDBLite consensus disorder prediction 430 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00245 K20131 RABGEF1; Rab5 GDP/GTP exchange factor - pvy:116131566 580.096
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02469 Bma-Chr1:82361616 Bma02g00245 Bma-Chr2:2575487 4.66E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g334 . . . . . . . . Cmo04g02424 Cmo15g00739 . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1256 Cone20ag0471 . . . . Blo17g00201 . . Bda13g01504 . Bpe14g00360 . Bma02g00245 . . . . . Car04g02239 Car15g00666 Cpe01g02014 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006627 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00245 Bma_Chr02 FPKM 4.690943 2.712029 7.794213 8.982981 8.715226 8.323678 9.026472 5.805321 6.446128 9.256215