Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00258 ATGGCGGCGTTTTGTCTTTCTAACCACGCTTTCTTCGCTTCTCCCCCTTCTTCTCTCTCCTTCTCACAACCTTCTACACCCCTCCCTCAGCCTTCTGTTCTCCTTCTCGCTCTCCATCGCCGCCATCCCTCTCCCCCTATTTTATCCTTCTCTCTCTCCCATCCTTATTCACCTTCCTTTTCTTATTCTCGTAGGCGCCCCTTCTCCTCATTTCCCCCCGCCGCTATGGACGCTGCAGCCACTACTAATATAGAAAAGGGGGAGGAAAGTGAGGATGATGAAGAAATGCTGGAAAGTGAAAAAGATGAAGTTATCTCAACAAGTTTTCAGGACCTTGTTCAAGAATATAAGGAAGCTCTTCTTAATGGCAATGAAAAGACTGCGTCTGAAATTGAGAGTAAATTGCTCATGATTGAGAGCGAGAAGAATGAATTGTTCCAGAAAGTCTCTGTTTTGTCCACAGAGATCACTGCTGGGAAGGAAAAATATATTCGCTTACAAGCAGATTTTGATAATTTTAGGAAAAGATCAGAGAACGAGAGACTTTCCATAAGAACTAATGCTCAAGGAGAGGTGATTGAGAGCCTTTTGACAATGGTTGACAATTTTGAGAGAGCCAAACAACAAATTAAGCCAGAAACTGAGAAGGAAAAAAGTATCGACACAAGCTATCAAGGTATATACAAGCAATTCGTTGAGATTATGAGGAGCTTGAATGTAGCTAGTGTGGCAACCATTGGAGAGCCATTTGATCCTTCTTTACATGAAGCCATTGCACGTGAGGAATCTGAAGAGTTTGATGAAGGAGTTGTAATTCAAGAATTTAGGCGAGGATTTCTTCTTGGAGATCGGCTTCTGAGACCAGCAATGGTGAAAGTTTCTTCAGGTCCTGGAAAAAAGAAATCCTCTGTTGCAACCGAGACATCTGCCGATCAACCAGCCACGGCCGCAGCAGCAGCAGCAGCAGCAGAAGTAAATGAATGA 984 43.7 MAAFCLSNHAFFASPPSSLSFSQPSTPLPQPSVLLLALHRRHPSPPILSFSLSHPYSPSFSYSRRRPFSSFPPAAMDAAATTNIEKGEESEDDEEMLESEKDEVISTSFQDLVQEYKEALLNGNEKTASEIESKLLMIESEKNELFQKVSVLSTEITAGKEKYIRLQADFDNFRKRSENERLSIRTNAQGEVIESLLTMVDNFERAKQQIKPETEKEKSIDTSYQGIYKQFVEIMRSLNVASVATIGEPFDPSLHEAIAREESEEFDEGVVIQEFRRGFLLGDRLLRPAMVKVSSGPGKKKSSVATETSADQPATAAAAAAAAEVNE 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2724615 2727194 - Bma014714.1 Bma02g00258 77508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00258 327 MobiDBLite consensus disorder prediction 292 327 - -
Bma02g00258 327 PANTHER GRPE PROTEIN 1 313 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bma02g00258 327 MobiDBLite consensus disorder prediction 299 313 - -
Bma02g00258 327 CDD GrpE 160 293 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bma02g00258 327 Gene3D Head domain of nucleotide exchange factor GrpE 240 294 IPR009012 GO:0006457
Bma02g00258 327 PRINTS GrpE protein signature 164 180 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bma02g00258 327 PRINTS GrpE protein signature 247 262 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bma02g00258 327 PRINTS GrpE protein signature 192 207 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bma02g00258 327 PRINTS GrpE protein signature 274 293 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bma02g00258 327 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 143 236 IPR013805 -
Bma02g00258 327 ProSitePatterns grpE protein signature. 250 293 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bma02g00258 327 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 242 296 IPR009012 GO:0006457
Bma02g00258 327 Hamap Protein GrpE [grpE]. 88 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bma02g00258 327 Gene3D - 122 237 IPR013805 -
Bma02g00258 327 Pfam GrpE 140 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Bma02g00258 327 PANTHER GRPE PROTEIN HOMOLOG 1 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00258 K03687 GRPE; molecular chaperone GrpE - vvi:100260744 316.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00258 Bma-Chr2:2724615 Bma10g00576 Bma-Chr10:7131258 1.73E-06 dispersed
Bma01g00859 Bma-Chr1:8086127 Bma02g00258 Bma-Chr2:2724615 5.94E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012843 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 1 2 0 1 1 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00258 Bma_Chr02 FPKM 0.723412 0.94146 1.002187 1.007304 1.744356 2.099925 1.639212 0.531066 0.499436 0.610519