Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00275 ATGCAAGTAAAAGGATCTGGTTCAGATGCTTTTCGAGTTAGTGTTTCAAGTGCCCCCAGCACCGCAAGTCACGGTTCTACGCCTGATGATCACGATGCTCTGGGTGATGTATACATATGGGGTGAAGTTATTAGTGATAATGTGGTCAAGGTTGGAGCTGACAAAAGTACTAACTATGTGACCTTAAGAACAGATGTGCTTCTTCCCAAGCCATTAGAGTCCAATGTAGCATTGGACGTTCAACATATATCCTGTGGGGTTATGCATTCTGCTCTAGTCACGAGGCAAGGTGAAGTCTTTACGTGGGGAGAGGAATCTGGAGGGAGGCTTGGCCATGGCGTTGGGAAAAATGTTATTCGGCCTTGTACTGTTGAATCATTAACAGCCACCAGTGTTGATTTTGTTTCTTGTGGGGAGTTCCATACTTGTGCTGTTACAATGGCTGGGGAACTTTATACCTGGGGAGATGGCACACATTATGCTGGCCTTCTTGGTCATGGCAGTGATGTTAGCCATTGGATACCAAAGAGGGTTTCAGGTGCGCTTGAAGGGCTTCAAATTGCCTCAGTAACGTGCGGACCTTGGCATACAGCCTTGATAACATCAATGGGACAGCTATTTACATTTGGCGTTGGAACATTTGGTGTATTGGGTCATGGAGACAGAGAAAGTGTTTCATACCCTAGAGAAGTGGAATCGCTATCAGGCTTAAGGACAATTGCCGTTGCATGCGGGGTATGGCATACTGCTGCCGTTGTCGAAGTTATCGTGACACAATCTAGTTCCTGCGTTTCATCAGGGAAGTTATTTACTTGGGGCGATGGAGATAAGAATCGCCTGGGGCATGGAGATAAAGATCCCCGGCTTAAACCAACTTGTGTACCTTCATTAATCGATTATAATTTTCACAAAATTTCTTGTGGCCACAGTTTAACCATCGGCTTAACCACGTCCGGACAAGTTTTCACTATGGGGAGTCCTGTTTACGGTCAGCTCGGGAATCCTAGCGCTGATGGGAAGCTACCATGCTTGGTAGAAGATAAGCTTGCAGGAGAATCCATCGAAGAAGTTGCATGCGGTGCATATCATGTCGCGGTACTAACTTGTAGAAATGAAGTTTATACGTGGGGAAAGGGTGCGAATGGAAGATTGGGTCATGGAGATGTTGAAGATCGAAAAATTCCCACTTTGGTTGAATGTTTGAAAGATAAACATGTCAAATATATTTCTTGTGGTTCTAACTATATGGCTGCCATTTGTCTTCATAAATGGGTTTCAAGTGCCGAGGAGTCGCAGTGTTCTTCTTGTAGACAGGCATTTGGATTTACTCGAAAAAGGCACAGCTGCTATAATTGTGGGTTTGTGCACTGCCATTCATGCAGTTCCAGAAGAGCAGTAAGAGCTGCACTGGCTCCTAATCCTGCTAAACCATATCGCGTATGTGACTCTTGTTATTCAAAATTGAACAACGGGTCTGAAGTTAGTAGTCATAGTAGGAAAAATGCAATACCTCGCCTTTCGGGTGCGAAAAAGGATAGATTAGAGAAGAATGAGCTTAAGGTGGCTGATTCTATGCCTTCCAATTTGGATTTAATAAAGCAATTAGATAGCAAAGCAGCCAAACAAGGTAGGAAGCCAGATACATACTCCCTCGTTCGCGCCTCTCAAGGACCTTTCTTGGTGCAGCATAAAGATGTAGTTTTACCCGTGGCTGTTGATTTGCGACGAATGGCTCCTAAGCCTATTCTTACGGCCAATGGAGTGAAGAGGTCTGTGTCACCTCTCTCAAAGAGAAGTCCTCCCCGATCGGCTACTCCTGTTCCTACAGCATCGGGACTTTCTTTCTCCAAAAGTGTTTCTGATAGCTTGAAGAGAACCAATGAACTTTTGAATCACGAAGTGTCAAGGTTACGAGCACAGGTGGAGAGCATGAGCCAGAGATATGAGCTCCAGGAACTAGAGCTTCAAAGATCGATGAAAAAGGCACAAGAAGCACAGGCTTTAGTGGCTGATGAATCTGCTAAATCTAAATCTGCAAAAGAAGTCATTAAATCACTTACAACTCAGCTCAAGGATATGGCAGAGAGGTTACCTGCTGGAGTTAACCAAACTGAGGACGCGAGGCCGGTACATCCTCCCAACGGTTTGGAACAAAATGGTATCCACTATTTAGAAACAAATGGAAAGTGCTATGCAAGATCCGATTCCATTAGCAGCTTCGCGATGGATTCTCCCTCGGTCATGGACACTGACGCATGGCAAGGAAGTCAAGGCTTAGCCACTTCACCAAGAGATAGCAGTGACATCAATCTTGAACAAGAGCAAAAGCTGCTGCCCTCCAATGGGATTGAGGATCGTAAATATTTTAGATTGCCAGAAGAAAGTAGCATACAAGAGGAACTTGATGGTCACTCTGAACCCACCAGCAATAATGAGAATAGTTTGAAATCCAGGAATTCTACTTTGCCTATAAATGGTAGTCAAGTTGAGGCAGAATGGATTGAACAATTCGAACCTGGTGTGTACATTACTCTCGTTGCGTTGCAAGATGGAGCGAGAGACATTAAACGAGTGCGCTTCAGCCGAAGACGATTTGAGGAGCATCAAGCTGAGAATTGGTGGGCCGAAAACCGGGAGAGGGCGTACGAGAAATACAACGTTCGTGGGGCCGACAAGTCTTCAATTTCGAGTCAAGCCGGTCGGAGATCAGAGGGTGGAGCTGTCTCACCCTCTTCCCTACAACCTTAG 2748 45.27 MQVKGSGSDAFRVSVSSAPSTASHGSTPDDHDALGDVYIWGEVISDNVVKVGADKSTNYVTLRTDVLLPKPLESNVALDVQHISCGVMHSALVTRQGEVFTWGEESGGRLGHGVGKNVIRPCTVESLTATSVDFVSCGEFHTCAVTMAGELYTWGDGTHYAGLLGHGSDVSHWIPKRVSGALEGLQIASVTCGPWHTALITSMGQLFTFGVGTFGVLGHGDRESVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSCVSSGKLFTWGDGDKNRLGHGDKDPRLKPTCVPSLIDYNFHKISCGHSLTIGLTTSGQVFTMGSPVYGQLGNPSADGKLPCLVEDKLAGESIEEVACGAYHVAVLTCRNEVYTWGKGANGRLGHGDVEDRKIPTLVECLKDKHVKYISCGSNYMAAICLHKWVSSAEESQCSSCRQAFGFTRKRHSCYNCGFVHCHSCSSRRAVRAALAPNPAKPYRVCDSCYSKLNNGSEVSSHSRKNAIPRLSGAKKDRLEKNELKVADSMPSNLDLIKQLDSKAAKQGRKPDTYSLVRASQGPFLVQHKDVVLPVAVDLRRMAPKPILTANGVKRSVSPLSKRSPPRSATPVPTASGLSFSKSVSDSLKRTNELLNHEVSRLRAQVESMSQRYELQELELQRSMKKAQEAQALVADESAKSKSAKEVIKSLTTQLKDMAERLPAGVNQTEDARPVHPPNGLEQNGIHYLETNGKCYARSDSISSFAMDSPSVMDTDAWQGSQGLATSPRDSSDINLEQEQKLLPSNGIEDRKYFRLPEESSIQEELDGHSEPTSNNENSLKSRNSTLPINGSQVEAEWIEQFEPGVYITLVALQDGARDIKRVRFSRRRFEEHQAENWWAENRERAYEKYNVRGADKSSISSQAGRRSEGGAVSPSSLQP 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3190142 3193226 - Bma014726.1 Bma02g00275 77525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00275 915 SMART fyve_4 422 490 IPR000306 GO:0046872
Bma02g00275 915 MobiDBLite consensus disorder prediction 887 915 - -
Bma02g00275 915 SUPERFAMILY FYVE/PHD zinc finger 423 495 IPR011011 -
Bma02g00275 915 Coils Coil 676 696 - -
Bma02g00275 915 MobiDBLite consensus disorder prediction 589 615 - -
Bma02g00275 915 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 190 200 IPR000408 -
Bma02g00275 915 PRINTS Chromosome condensation regulator RCC1 signature 308 326 IPR000408 -
Bma02g00275 915 PRINTS Chromosome condensation regulator RCC1 signature 149 165 IPR000408 -
Bma02g00275 915 PRINTS Chromosome condensation regulator RCC1 signature 99 115 IPR000408 -
Bma02g00275 915 PRINTS Chromosome condensation regulator RCC1 signature 206 220 IPR000408 -
Bma02g00275 915 PRINTS Chromosome condensation regulator RCC1 signature 80 93 IPR000408 -
Bma02g00275 915 PRINTS Chromosome condensation regulator RCC1 signature 190 206 IPR000408 -
Bma02g00275 915 PRINTS Chromosome condensation regulator RCC1 signature 366 387 IPR000408 -
Bma02g00275 915 MobiDBLite consensus disorder prediction 1 27 - -
Bma02g00275 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 204 255 IPR000408 -
Bma02g00275 915 Gene3D - 256 433 IPR009091 -
Bma02g00275 915 Gene3D - 12 255 IPR009091 -
Bma02g00275 915 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 892 - -
Bma02g00275 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 496 IPR013083 -
Bma02g00275 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 149 203 IPR000408 -
Bma02g00275 915 MobiDBLite consensus disorder prediction 796 822 - -
Bma02g00275 915 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 242 252 IPR000408 -
Bma02g00275 915 MobiDBLite consensus disorder prediction 890 915 - -
Bma02g00275 915 ProSiteProfiles BRX domain profile. 831 886 IPR013591 -
Bma02g00275 915 MobiDBLite consensus disorder prediction 802 822 - -
Bma02g00275 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 422 IPR000408 -
Bma02g00275 915 Pfam FYVE zinc finger 423 489 IPR000306 GO:0046872
Bma02g00275 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 96 IPR000408 -
Bma02g00275 915 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 83 93 IPR000408 -
Bma02g00275 915 SUPERFAMILY RCC1/BLIP-II 34 424 IPR009091 -
Bma02g00275 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 318 IPR000408 -
Bma02g00275 915 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 892 - -
Bma02g00275 915 Pfam Transcription factor regulating root and shoot growth via Pin3 830 885 IPR013591 -
Bma02g00275 915 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 427 489 IPR017455 -
Bma02g00275 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 370 IPR000408 -
Bma02g00275 915 Coils Coil 620 668 - -
Bma02g00275 915 Pfam Regulator of chromosome condensation (RCC1) repeat 372 419 IPR000408 -
Bma02g00275 915 Pfam Regulator of chromosome condensation (RCC1) repeat 97 145 IPR000408 -
Bma02g00275 915 Pfam Regulator of chromosome condensation (RCC1) repeat 149 200 IPR000408 -
Bma02g00275 915 Pfam Regulator of chromosome condensation (RCC1) repeat 266 313 IPR000408 -
Bma02g00275 915 Pfam Regulator of chromosome condensation (RCC1) repeat 318 367 IPR000408 -
Bma02g00275 915 Pfam Regulator of chromosome condensation (RCC1) repeat 204 252 IPR000408 -
Bma02g00275 915 MobiDBLite consensus disorder prediction 748 768 - -
Bma02g00275 915 MobiDBLite consensus disorder prediction 1 29 - -
Bma02g00275 915 Pfam Transcription factor BRX N-terminal domain 671 705 IPR027988 -
Bma02g00275 915 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 97 148 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00275 - - - qsu:111994555 1383.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02116 Bma02g00275 CCT
Bma02g00275 Bma04g00032 CCT
Bma01g00865 Bma02g00275 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01174 Bma-Chr1:12980236 Bma02g00275 Bma-Chr2:3190142 0 dispersed
Bma01g02116 Bma-Chr1:77370540 Bma02g00275 Bma-Chr2:3190142 0 dispersed
Bma02g00275 Bma-Chr2:3190142 Bma04g00032 Bma-Chr4:355715 0 dispersed
Bma02g00266 Bma-Chr2:2855244 Bma02g00275 Bma-Chr2:3190142 0 proximal
Bma01g00865 Bma-Chr1:8127306 Bma02g00275 Bma-Chr2:3190142 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83