Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00276 ATGGAAACCAGACTCGCTGCCTCTCTCGGCCTTTCATCTCGTAATCCAGATCACTCCCTTCCCGTTGCTGGTTTCACCTCCATTTTCACCCATTTCAACACCTTCTTAGCTTCTCCAAATCATAGTCTCGTTGCTGCTGGTTCGAAGAGGCTCAACAATGGGGATAAATTCATCGCCCGCCTCTCTTTCGGTTCTGTATCGTTATCATCAAAAGCTCAGATTTCAACATCCGAATCCTCTAACTGGATCAGCCCAAAAGTCCTGTCCTTATCAGTCTTGGAACGCGCCTTTATCGGCGCCATTGGCGGTGGAGTTGCCGGTGCTTTCACCCATGTCTGTTTGCACCCTCTCGATACCGTAAAGACGAAGCTTCAGACAAAGGGGGCGGCTGAAATTTATAAGAACACATTCGACGCCATTGCCAAAACCTTCAAATCCAAAGGCATATTGGGATTTTACAGCGGCATCTCTGCAGTAATCGTTGGCTCTACTGCCTCGTCGGCTGTTTATTTCGGGACATGCGAGTTCGGGCAATCAATTTTATCGCAATTCGACAACTACCCATCGTTTCTAATCCCTCCGACAGCCGGAGCGATGGGAAACATCTTCTCGTCGGCGATTATGGTGCCGAAAGAGTTGATCACACAGCGAATGCAAGCGGGAGCTAAAGGCAAGTCATGGGAAGTTTTGTTAAAGATTCTGGAGAAAGACGGCGTTCTGGGTTTATACGCGGGATATTCTGCGACATTGCTGAGGAATTTACCAGCCGGAGTATTGAACTACTCGTCGTTTGAATACCTAAAAGCTGCCGTTTTGAGCAGGACGAAGCAGAAACAGTTAGACCCCTTCCAGAGCGTCTGCTGCGGCGCACTGGCCGGCGCGATAGCTGCTTCTCTCACGAATCCTCTTGATGTTGTCAAGACTCGGTTAATGACTCAGGTTCATGGGGAGGCCATGAATAAGCTATCTGCGGCGATGTCCGGTGGAGTTTCGGCTACTCTCCGGCGAATACTGAAGGAAGAAGGGTTGGCTGGATTTGGCCATGGAATGGGTCCTCGAGTTCTCCATGGCTCCTGTTTCTCTGCGTTGGGTTTTCTCGCGTTCGAGACTGCCAGAGTTACAATTCTGCACCATTATCGCAAGCGAAAGGAGTTAGCTCTGGCCTGA 1167 49.87 METRLAASLGLSSRNPDHSLPVAGFTSIFTHFNTFLASPNHSLVAAGSKRLNNGDKFIARLSFGSVSLSSKAQISTSESSNWISPKVLSLSVLERAFIGAIGGGVAGAFTHVCLHPLDTVKTKLQTKGAAEIYKNTFDAIAKTFKSKGILGFYSGISAVIVGSTASSAVYFGTCEFGQSILSQFDNYPSFLIPPTAGAMGNIFSSAIMVPKELITQRMQAGAKGKSWEVLLKILEKDGVLGLYAGYSATLLRNLPAGVLNYSSFEYLKAAVLSRTKQKQLDPFQSVCCGALAGAIAASLTNPLDVVKTRLMTQVHGEAMNKLSAAMSGGVSATLRRILKEEGLAGFGHGMGPRVLHGSCFSALGFLAFETARVTILHHYRKRKELALA 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3196651 3197817 + Bma014727.1 Bma02g00276 77526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00276 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 188 270 IPR018108 -
Bma02g00276 388 PANTHER PROTEIN MITOFERRINLIKE 1, CHLOROPLASTIC 20 380 - -
Bma02g00276 388 SUPERFAMILY Mitochondrial carrier 97 369 IPR023395 -
Bma02g00276 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 280 374 IPR018108 -
Bma02g00276 388 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 20 380 - -
Bma02g00276 388 Pfam Mitochondrial carrier protein 279 375 IPR018108 -
Bma02g00276 388 Pfam Mitochondrial carrier protein 100 181 IPR018108 -
Bma02g00276 388 Pfam Mitochondrial carrier protein 195 271 IPR018108 -
Bma02g00276 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 94 180 IPR018108 -
Bma02g00276 388 PRINTS Mitochondrial carrier protein signature 112 126 IPR002067 GO:0055085
Bma02g00276 388 PRINTS Mitochondrial carrier protein signature 99 112 IPR002067 GO:0055085
Bma02g00276 388 PRINTS Mitochondrial carrier protein signature 289 311 IPR002067 GO:0055085
Bma02g00276 388 Gene3D Mitochondrial carrier domain 224 387 IPR023395 -
Bma02g00276 388 Gene3D Mitochondrial carrier domain 56 223 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00276 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - zju:107421682 504.212
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00866 Bma02g00276 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00276 Bma-Chr2:3196651 Bma06g00543 Bma-Chr6:28710987 8.30E-08 dispersed
Bma01g00866 Bma-Chr1:8135595 Bma02g00276 Bma-Chr2:3196651 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006009 3 1 2 2 2 1 1 1 1 2 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00276 Bma_Chr02 FPKM 3.274249 4.877469 6.903224 6.284008 27.258381 24.455379 27.085445 6.407819 6.340088 7.513594