Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00286 ATGGTTCAGGTAGTGCCTGTGCACATTAGCTCCAAATCCGAACTCAAGCGAAAGGAGAAGCTGCAGAAGAAAGCCAAGTCTGGTGGATTTGAGTCCTTAGGGTTGAGTTCGGATGTCTTCAGAGGAATCAAACACAAGGGCTACAGAGTTCCTACTCCGATACAGAGGAAGACCATGCCTATCATACTGTCCGGTGCAGACGTCGTGGCCATGGCTCGAACTGGCTCCGGTAAGACTGCCGCATTTCTTATCCCCATGTTGGAGCGCTTGAAGCAGCATGTGCCGCAGAGTGGTGTCAGAGCCCTCATTTTATCTCCCACCAGAGATTTGGCTATTCAAACCCTCAAGTTTGCTACTGAACTTGGCCGATTTACCGATCTTCGAATAAGTTTGCTGGTTGGTGGGGACAGCATGCAAAGTCAGTTTGAAGAATTATCTCAGAATCCGGATATCATTATTGCTACTCCAGGCAGGCTTATGCATCTTTTGTCTGAAGTTGATGATATGTCATTACGAACAGTGGAATATGTGGTTTTTGATGAAGCAGATTCTCTTTTTGGTATGGGTTTTGCTGAGCAGTTGCATCAAATCCTCTCACAGTTGAGTGAGAATCGCCAGACATTACTCTTTAGTGCAACCCTACCAAGTGCTCTTGCTGAGTTTGCCAAGGCAGGTTTGCGAGACCCTAAGCTCGTGCGGCTTGATTTGGAAAACAAGATCAGCCCTGACTTGAAGCTTACTTTTTTTACCTTAAGGCATGAAGAAAAACATGCTGCATTACTATATTTGGTAAGGGAGCATATAGGTATTGATCAGCAGACATTAATTTTTGTATCTACAAAACATCATGTGGAGTTTCTCAATATGTTATTTAGAGAGGAGGGTATTGTACCTTCTGTCTGTTATGGTGACATGGACCAAGATGCTCGCAAGATTCATGTATCAAAGTTTAGGGCTAGAAAAACTATGCTGTTAATCGTGACAGATATTGCAGCTAGGGGTATTGACATTCCATTGCTTGATAATGTGATCAATTGGGACTTTCCTCCGAAGCCTAAAATCTTTGTTCATCGAGTTGGACGAGCTGCAAGGTGTGGTCGTACTGGTACTGCCTTTTCTTTTGTGACATCTGAAGATCTGCCTTACCTTTTAGACCTTCATCTTTTTCTCTCAAAACCAGTTCGGCCTGCCCCCACTGGGGAAGAGGTTTTGCATGATGTGGATGGAGTGATGTCAAAAATTAATCAAGCCACAGCTAATGGAGCAACTGTTTATGGGCGTTTTCCTCAGGAGGTTATCGATCTTGCTGCTGATAGAATACGGGAAATTATTGATTCATCTGCAGAATTGAGTTTATTACAGAGAACATGTGTAAATGCATTTCGCTTATATTCAAAGACAAAACCCTTGCCTTCAAAAGAGTCCATCAGAAGATCCAAAGACTTGGTGCGCGAAGGGCTTCATCCAATCTTTAAAAATGTAATGGAAGGTGGGCAATTAAGGGCATTGGCTTTTTCTGAGCGATTGAAAATGTTTAGACCCAAGCAGACAATTTTGGAAGCTGAAGGTGATGCTGCTAAATCAAAGCATCGGCAGGGCCCTTCCAGTCAATGGGTTGATGTGATGAAAAGAAAGAGAGCTATTCATGAGGAAGTCATTAACTTGGTACAGAAACAACGTTCTAGCAGTTACACTGAAAAGGAAGTCCTTCCTGAAACCCCTTCATTGCCAGCTAAGAAAGAAAAAGCTAGTCGTGGGTTGAAAAGAAAGTCACTGATTTTTAAAGACGAGGAGTTCTATATAAGTTCAGTGCCTACAAATCATCATATGGAAGCAGGACTCTCAGTACGAGGTGATCAAGGTTTTGGATCAAACAGGTTAGAAAATGCTGTTCTAGATTTAGTTGGAGATGATAGTACCAGCATGCAGAAACAGAAATCTGTATATCATTGGGATAAGAGGGGTAAAAAGTACATCAAGTTAAATAATGGCGAGCGTGTAACAGCTAGTGGAAAGATAAAGACAGAGGGTGGAGCAAAAGTTAAAGCTAACAAAACCGGAATATACAAGAAATGGAAAGAGCGCTCACACACCAAAATATCTCTCCAGGGAACTGATAGTGAAGGACATGCCGATAAATCCACTAGCTTTGCAGGAAAACAGCATTTTTCAAGAGGAAATAGAAACTTTAGGAACGGCAAGAGACAAGATTCAGTGCCAAATGCTAATGTGCGTTCAGAAGTTAAAGGTCTAGAACAAATTCGGAAGGAAAGGCAGAAGAAGGCAAATAAAAAATCTCATATGAAGAATTCCTCAAAGGGAGGGAGAAAAGGAAAAGGCAGCGGAAAAGGAATGAGGGGAAGAGGCAAAAAATAG 2376 42.26 MVQVVPVHISSKSELKRKEKLQKKAKSGGFESLGLSSDVFRGIKHKGYRVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLIPMLERLKQHVPQSGVRALILSPTRDLAIQTLKFATELGRFTDLRISLLVGGDSMQSQFEELSQNPDIIIATPGRLMHLLSEVDDMSLRTVEYVVFDEADSLFGMGFAEQLHQILSQLSENRQTLLFSATLPSALAEFAKAGLRDPKLVRLDLENKISPDLKLTFFTLRHEEKHAALLYLVREHIGIDQQTLIFVSTKHHVEFLNMLFREEGIVPSVCYGDMDQDARKIHVSKFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARCGRTGTAFSFVTSEDLPYLLDLHLFLSKPVRPAPTGEEVLHDVDGVMSKINQATANGATVYGRFPQEVIDLAADRIREIIDSSAELSLLQRTCVNAFRLYSKTKPLPSKESIRRSKDLVREGLHPIFKNVMEGGQLRALAFSERLKMFRPKQTILEAEGDAAKSKHRQGPSSQWVDVMKRKRAIHEEVINLVQKQRSSSYTEKEVLPETPSLPAKKEKASRGLKRKSLIFKDEEFYISSVPTNHHMEAGLSVRGDQGFGSNRLENAVLDLVGDDSTSMQKQKSVYHWDKRGKKYIKLNNGERVTASGKIKTEGGAKVKANKTGIYKKWKERSHTKISLQGTDSEGHADKSTSFAGKQHFSRGNRNFRNGKRQDSVPNANVRSEVKGLEQIRKERQKKANKKSHMKNSSKGGRKGKGSGKGMRGRGKK 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3318575 3324283 + Bma014738.1 Bma02g00286 77536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00286 791 Gene3D - 6 233 IPR027417 -
Bma02g00286 791 MobiDBLite consensus disorder prediction 760 791 - -
Bma02g00286 791 SMART helicmild6 285 366 IPR001650 -
Bma02g00286 791 SMART DBP10CT_2 633 695 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Bma02g00286 791 CDD DEADc_DDX54 28 233 - -
Bma02g00286 791 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 7 786 - -
Bma02g00286 791 Pfam DBP10CT (NUC160) domain 633 694 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Bma02g00286 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 387 IPR027417 -
Bma02g00286 791 Pfam DEAD/DEAH box helicase 52 219 IPR011545 GO:0003676|GO:0005524
Bma02g00286 791 Coils Coil 751 771 - -
Bma02g00286 791 CDD SF2_C_DEAD 248 375 - -
Bma02g00286 791 SMART ultradead3 47 249 IPR014001 -
Bma02g00286 791 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 28 56 IPR014014 GO:0003724
Bma02g00286 791 MobiDBLite consensus disorder prediction 702 726 - -
Bma02g00286 791 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 405 IPR001650 -
Bma02g00286 791 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 7 786 - -
Bma02g00286 791 Pfam Helicase conserved C-terminal domain 256 366 IPR001650 -
Bma02g00286 791 Gene3D - 234 398 IPR027417 -
Bma02g00286 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 233 IPR027417 -
Bma02g00286 791 MobiDBLite consensus disorder prediction 697 791 - -
Bma02g00286 791 MobiDBLite consensus disorder prediction 563 582 - -
Bma02g00286 791 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 59 232 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00286 K14808 DDX54, DBP10; ATP-dependent RNA helicase DDX54/DBP10 [EC:3.6.4.13] - pvy:116117241 1222.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00286 Bma04g00302 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00286 Bma-Chr2:3318575 Bma02g00946 Bma-Chr2:49337514 1.24E-64 dispersed
Bma06g00006 Bma-Chr6:207829 Bma02g00286 Bma-Chr2:3318575 1.41E-56 dispersed
Bma02g00286 Bma-Chr2:3318575 Bma15g00330 Bma-Chr15:3207888 1.77E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1179 . . . . . . Bma04g00302 . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1487 . . . . . . Blo17g00228 . . Bda13g01542 . Bpe14g00323 . Bma02g00286 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009899 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00286 Bma_Chr02 FPKM 0.0 0.0 8.662456 7.56988 48.248409 56.222603 49.05175 3.995535 4.286568 3.874527