Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00288 ATGGCACGAGTCTGTTGGCCGTATTTTGATCCTGAATATGAGAACATGAGCACTCGGATCAATCCTCCAAGAGTTTCAGTAGACAACACTAGTTGCAGCGATTGCACTCTTGTGAAGGTTGACAGCATGAACAAACCAGGAATTCTTCTGGAAGTGGTCCAGTTTCTGTCTGACCTTGACCTCATTATTACCAAAGCTTACATCTCCTCTGACGGCGGATGGTTCATGGACGTTTTTCATGTGACTGATCAGCAAGGAAAGAAGATCGTCGATGGAAAAACCATTGACTACATAGAGAAGGCTTTAGGACCAAAGGGTCACGCCAAAGATGGGGGAAAGACTTGGCCAGGGAAGAGGGTCGGAGTCCATTCGATCGGCGATCACACTGCGATCGAACTAACCGGTAGAGATCGCCCAGGTCTCTTATCAGAAATATCAGCCATCCTTACCAACCTCCATTTCAATGTAGTCGCCGCAGAAGTTTGGACACATAATAGGCGTATAGCATGTGTACTTTATGTTAACGATGACGCCACATGTAGGGCTGTCAATGATCCGATCAGATTATCGATAATGGAGGAGCAGCTGAAAAACGTCCTCCGTGTATGTGAGGACGACGAGAATGTGGCCCACACCAGCTTCTCTGTGGGGCTAACTCACGTTGATCGACGGCTCCATCAGATGTTATTTGCTGATCGGGATTATGAAGGTGGTTTAGTGACTGAGATGGACTATCCTCCTTCGATTAGACCGAAGATAACGATTGAGCATTGCAAAGAAAAAGGGTATTCGGTTGTTAGTGTTCGATGCAAAGACAGAGCAAAATTGTTGTTCGACATTGTCTGCACCTTGACAGATATGCAATATGTAGTTTTTCATGCTTCGATCTCATCGGATGGTCCCAACGCTTCACAGGAGTACTATATTCGCCACATGGATGGTTGCACCCTCGATACTCAAGAAGAGAAAGAAACGGTCATCAAATGTCTTGAAGCCGCAATTCGAAGAAGAGTTAGTGAGGGGGTCAGCTTGGAGCTATGTGCGAAGGATCGAGTAGGTTTGCTATCACAAGTAACAAGAATACTAAGAGAGAACGGATTAACCGTAACGAGAGCCGGCGTCTCTACGGTGGGGGAGCAGGCGATGAACGTATTCTACGTCCGGGACGCATCCGGTAATCCAGTGGACATGAAAACAGTGGAATCGCTTCGCAAGGAAATAGGACACACAATGATGTTGAATGTGAAAAAAGTGCCTCAAAATGCCAAGCCTGCAGAGGCTAATTCCAATAATGGATGGGCCAAAACCAGGTTCTTCTTTGGAAACTTACTGGAAAGGTTTTTGGCTTGA 1350 46.22 MARVCWPYFDPEYENMSTRINPPRVSVDNTSCSDCTLVKVDSMNKPGILLEVVQFLSDLDLIITKAYISSDGGWFMDVFHVTDQQGKKIVDGKTIDYIEKALGPKGHAKDGGKTWPGKRVGVHSIGDHTAIELTGRDRPGLLSEISAILTNLHFNVVAAEVWTHNRRIACVLYVNDDATCRAVNDPIRLSIMEEQLKNVLRVCEDDENVAHTSFSVGLTHVDRRLHQMLFADRDYEGGLVTEMDYPPSIRPKITIEHCKEKGYSVVSVRCKDRAKLLFDIVCTLTDMQYVVFHASISSDGPNASQEYYIRHMDGCTLDTQEEKETVIKCLEAAIRRRVSEGVSLELCAKDRVGLLSQVTRILRENGLTVTRAGVSTVGEQAMNVFYVRDASGNPVDMKTVESLRKEIGHTMMLNVKKVPQNAKPAEANSNNGWAKTRFFFGNLLERFLA 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3327664 3330308 - Bma014739.1 Bma02g00288 77538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00288 449 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR3 4 448 - -
Bma02g00288 449 CDD ACT_ACR_4 341 412 - -
Bma02g00288 449 ProSiteProfiles ACT domain profile. 130 211 IPR002912 -
Bma02g00288 449 SUPERFAMILY ACT-like 339 408 IPR045865 -
Bma02g00288 449 CDD ACT_ACR_2 129 201 - -
Bma02g00288 449 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 4 448 IPR040217 -
Bma02g00288 449 ProSiteProfiles ACT domain profile. 343 420 IPR002912 -
Bma02g00288 449 Gene3D - 338 419 - -
Bma02g00288 449 SUPERFAMILY ACT-like 32 106 IPR045865 -
Bma02g00288 449 CDD ACT_ACR_1 35 106 - -
Bma02g00288 449 Gene3D - 128 211 - -
Bma02g00288 449 CDD ACT_ACR_3 263 337 - -
Bma02g00288 449 Pfam ACT domain 343 403 IPR002912 -
Bma02g00288 449 Pfam ACT domain 130 200 IPR002912 -
Bma02g00288 449 Pfam ACT domain 265 326 IPR002912 -
Bma02g00288 449 Pfam ACT domain 37 85 IPR002912 -
Bma02g00288 449 ProSiteProfiles ACT domain profile. 37 116 IPR002912 -
Bma02g00288 449 SUPERFAMILY ACT-like 125 204 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00288 - - - vvi:100250578 772.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00288 Bma-Chr2:3327664 Bma05g01145 Bma-Chr5:50500163 3.98E-06 dispersed
Bma04g00073 Bma-Chr4:632477 Bma02g00288 Bma-Chr2:3327664 7.83E-76 dispersed
Bma02g00288 Bma-Chr2:3327664 Bma15g00111 Bma-Chr15:1193385 2.55E-160 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0807 Cone20ag0412 . Csa03g04320 Chy04g00380 . Blo17g00230 . . Bda13g01544 . Bpe14g00321 . Bma02g00288 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016218 2 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00288 Bma_Chr02 FPKM 1.70614 3.650761 0.0 0.51166 0.0 0.0 0.0 2.796895 1.530813 2.350965