Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00290 ATGACCAGAAAGAAGGTGAAGCTTTCGTTCATCCTTAATGATTCTGCAAGAAAGGCCACTTTCAAGAAGAGGAAGAAAGGTCTGATAAAGAAAGTGAGCGAGCTGAGCACTCTGTGTGGAATCGAAGCTTGTGCTGTGATTTACAGTCCGTACGAATCTCATCCTGAGGTATGGCCGTCTGTCAGTGGAGTCCAACGTGTTCTTGCCAGGTTCAGGAACATGCCAGAAATGGAGCAAAGCAAGAAGATGATGAACCAGGAGAGCTTCCTCAGGCAGAGGATAACGAAAGCTGACGAACAGCTGAAGAAGCTGTTGAAGGAGAACAGAGAGAAGGAGATTACTCGGGTCATGTTCGACTGCCTGACTGGAAGATCTTTCCAAGGTCTAACAATGGTGGATTTGAGCGATCTAGGGTGGGTGGTCGACCGGCATTTGAACGACATGGCAAAGAGAGACGAGTATCTGAACAACCCAGTGACCTTGGTTGCACCAACAATGGCGGGCGAGGAAGAAATAGAGTATAGAAATCGAGAACCAAGCTTTCAAACAATGGAACCAGTGCAGAGATCATCACACCCATGGTTTATTGAAATGGCGAATTCAACTCGAGATCATCATCAACATCATCATAATCAAATGATGGGATTTGGAGCGGAGGATATGATTTTACCCTTTGGAGATAGAAACCATAGCTCTATCTGGTCTACTCCATTTTCACCATGA 723 45.64 MTRKKVKLSFILNDSARKATFKKRKKGLIKKVSELSTLCGIEACAVIYSPYESHPEVWPSVSGVQRVLARFRNMPEMEQSKKMMNQESFLRQRITKADEQLKKLLKENREKEITRVMFDCLTGRSFQGLTMVDLSDLGWVVDRHLNDMAKRDEYLNNPVTLVAPTMAGEEEIEYRNREPSFQTMEPVQRSSHPWFIEMANSTRDHHQHHHNQMMGFGAEDMILPFGDRNHSSIWSTPFSP 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3336861 3337679 - Bma014741.1 Bma02g00290 77540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00290 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bma02g00290 240 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Bma02g00290 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma02g00290 240 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bma02g00290 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma02g00290 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma02g00290 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma02g00290 240 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bma02g00290 240 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bma02g00290 240 Coils Coil 87 114 - -
Bma02g00290 240 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 216 - -
Bma02g00290 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00290 Bma-Chr2:3336861 Bma14g01110 Bma-Chr14:13960088 1.27E-13 dispersed
Bma01g02015 Bma-Chr1:74728054 Bma02g00290 Bma-Chr2:3336861 1.20E-30 transposed
Bma14g01938 Bma-Chr14:41326510 Bma02g00290 Bma-Chr2:3336861 4.50E-74 transposed
Bma15g00363 Bma-Chr15:3835191 Bma02g00290 Bma-Chr2:3336861 4.46E-75 transposed
Bma01g00881 Bma-Chr1:8264151 Bma02g00290 Bma-Chr2:3336861 2.63E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56858 PF00319 SRF-TF 3.20E-18 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00290 - - vvi:100254549 272.322