Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g00290 | ATGACCAGAAAGAAGGTGAAGCTTTCGTTCATCCTTAATGATTCTGCAAGAAAGGCCACTTTCAAGAAGAGGAAGAAAGGTCTGATAAAGAAAGTGAGCGAGCTGAGCACTCTGTGTGGAATCGAAGCTTGTGCTGTGATTTACAGTCCGTACGAATCTCATCCTGAGGTATGGCCGTCTGTCAGTGGAGTCCAACGTGTTCTTGCCAGGTTCAGGAACATGCCAGAAATGGAGCAAAGCAAGAAGATGATGAACCAGGAGAGCTTCCTCAGGCAGAGGATAACGAAAGCTGACGAACAGCTGAAGAAGCTGTTGAAGGAGAACAGAGAGAAGGAGATTACTCGGGTCATGTTCGACTGCCTGACTGGAAGATCTTTCCAAGGTCTAACAATGGTGGATTTGAGCGATCTAGGGTGGGTGGTCGACCGGCATTTGAACGACATGGCAAAGAGAGACGAGTATCTGAACAACCCAGTGACCTTGGTTGCACCAACAATGGCGGGCGAGGAAGAAATAGAGTATAGAAATCGAGAACCAAGCTTTCAAACAATGGAACCAGTGCAGAGATCATCACACCCATGGTTTATTGAAATGGCGAATTCAACTCGAGATCATCATCAACATCATCATAATCAAATGATGGGATTTGGAGCGGAGGATATGATTTTACCCTTTGGAGATAGAAACCATAGCTCTATCTGGTCTACTCCATTTTCACCATGA | 723 | 45.64 | MTRKKVKLSFILNDSARKATFKKRKKGLIKKVSELSTLCGIEACAVIYSPYESHPEVWPSVSGVQRVLARFRNMPEMEQSKKMMNQESFLRQRITKADEQLKKLLKENREKEITRVMFDCLTGRSFQGLTMVDLSDLGWVVDRHLNDMAKRDEYLNNPVTLVAPTMAGEEEIEYRNREPSFQTMEPVQRSSHPWFIEMANSTRDHHQHHHNQMMGFGAEDMILPFGDRNHSSIWSTPFSP | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3336861 | 3337679 | - | Bma014741.1 | Bma02g00290 | 77540 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g00290 | 240 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 51 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00290 | 240 | Gene3D | - | 13 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Bma02g00290 | 240 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00290 | 240 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Bma02g00290 | 240 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00290 | 240 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00290 | 240 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00290 | 240 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Bma02g00290 | 240 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00290 | 240 | Coils | Coil | 87 | 114 | - | - | |
Bma02g00290 | 240 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 | 1 | 216 | - | - | |
Bma02g00290 | 240 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 216 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g00290 | Bma-Chr2:3336861 | Bma14g01110 | Bma-Chr14:13960088 | 1.27E-13 | dispersed | |
Bma01g02015 | Bma-Chr1:74728054 | Bma02g00290 | Bma-Chr2:3336861 | 1.20E-30 | transposed | |
Bma14g01938 | Bma-Chr14:41326510 | Bma02g00290 | Bma-Chr2:3336861 | 4.50E-74 | transposed | |
Bma15g00363 | Bma-Chr15:3835191 | Bma02g00290 | Bma-Chr2:3336861 | 4.46E-75 | transposed | |
Bma01g00881 | Bma-Chr1:8264151 | Bma02g00290 | Bma-Chr2:3336861 | 2.63E-100 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56858 | PF00319 | SRF-TF | 3.20E-18 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g00290 | - | - | vvi:100254549 | 272.322 |