Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00332 ATGGGAGAGGTACAGAAATGCTGCGTGGTGACGGGAGGGCGGGGCTTCGCGGCGCGGCATTTGGTGGAAATGCTTATCAAGTACGATATGTTCACCGTTCGTGTTGCTGATTTAGGTCCCGCCATTGAACTCGAGACCAGCGAGGAGCATGGAGTCCTTGGGGAAGCTTTACGTTCAGGCCGGGCTGAATACGTCTCCACGGATCTCCGAAACAAAGCTCAGGTGTTAAAAGCTTTTGATGGAGCCGAGGTTGTATTCCACATGGCTGCTCCGAATTCATCCATCAACAATTACAAGCTTCATTACTCTGTCAATGTCGAAGGAACGAAGAATGTAATCGATGCTTGCATTGAGAAAAACGTCAAGAGACTAATCTATACGAGTTCACCGAGTGTCGTGTTTGATGGCATTCATGGAATTATCAATGGGGATGAGTCGCTGCCCTATCCAGAGAAGCACATTGATTCCTATTCTGCTACCAAATCTGAAGGAGAGGCGTTAATCATCAAAGCAAATGGTGCTAATGGGCTTCTAACTTGCAGCATAAGGCCTAGCAGCATTTTTGGTCCTGGTGATAGATTGCTGGTTCCAACTTTAGTAGCAACTGCCAGGGCAGGAAAGTCCAAGTTTATTATTGGTGATGGCAATAACATTAACGACTTCACTTATGTTGAAAATGTGGCACATGCCCATGTTTGTGCTGAACGGGCCCTAGCATCGGAAGGAAGTGTTGCAGAAAAAGCATCTGGACAGGCATATTTTATTACTAATACGGAGCCTATCAAGTTTTGGGAGTTTATGTCTCTTCTTCTAGAAGGTCTTGGTTATCGGAGGCCTTATATTAAGATACCGGTCTTTGTTATGATGCCGATTGCTTTTATCGTGGAGGGGATATTTAAGTTATTAGGCCCTTATGGAATGGCTGTTCCACAGTTGATACCTTCTAGAGTTAGAATTCTTTCTTGCAGTAGATCTTTCAACTGCTCAAAGGCGAAAGATCGACTTGGTTACTCACCAATAATATCACTTCAGGAAGGTATCAACAAGACCATTGAATCATTCTCAAACTTGAAAGCTGAACATCATCCTGAAAAAACAGGGCCATCAAAAGCTTCCTTGTACCTCGGCAGTGGAAGAATTGCAGACACTTTACTCTGGAAGAATAAAAAACAGACCCTGACAGTATTGTTAGCTTTGGTGGCAATTTACTACAACATCATTCTGCCTGGAGTTACCCTTATTACTGCACTTTCAAAGATTCTCTTGGTGGTTTTGATATTCTTATTCATTCATGGGAATTTGCCTGATAAAATATTTGGATATAGGATCGAGAAAATCTCCACGTCACATTTCCACTTATCAGAAGAGATTTCCCGAAAGGTTGCTGCATCAACGGCCTCTTCATGGAACAATGCAGTTAATATTTTTAAGTCCCTTTGCATGGGAAATGACTTCATCCTCTTTGTCAAGGTTATAATCTTCCTGTTGGTAGTAAGCTTTACTCCAGCCGTGTCACTTCAAAGTTTATTTCTTATAGTACTTCTAATTGCTTTCGGAGCTTTCTTTGTATATGAAAAAAAGGAGCAAGAAATCGATGCTTTGTTTCTTGAAATTCTCTCTTTTGGATGCAAAGTGAAGTCAGATGCCGTCAGAAAGTTATGTATCTCCAAGAAGGTCGGCTGA 1683 42.25 MGEVQKCCVVTGGRGFAARHLVEMLIKYDMFTVRVADLGPAIELETSEEHGVLGEALRSGRAEYVSTDLRNKAQVLKAFDGAEVVFHMAAPNSSINNYKLHYSVNVEGTKNVIDACIEKNVKRLIYTSSPSVVFDGIHGIINGDESLPYPEKHIDSYSATKSEGEALIIKANGANGLLTCSIRPSSIFGPGDRLLVPTLVATARAGKSKFIIGDGNNINDFTYVENVAHAHVCAERALASEGSVAEKASGQAYFITNTEPIKFWEFMSLLLEGLGYRRPYIKIPVFVMMPIAFIVEGIFKLLGPYGMAVPQLIPSRVRILSCSRSFNCSKAKDRLGYSPIISLQEGINKTIESFSNLKAEHHPEKTGPSKASLYLGSGRIADTLLWKNKKQTLTVLLALVAIYYNIILPGVTLITALSKILLVVLIFLFIHGNLPDKIFGYRIEKISTSHFHLSEEISRKVAASTASSWNNAVNIFKSLCMGNDFILFVKVIIFLLVVSFTPAVSLQSLFLIVLLIAFGAFFVYEKKEQEIDALFLEILSFGCKVKSDAVRKLCISKKVG 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4693439 4698746 + Bma014790.1 Bma02g00332 77582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00332 560 Pfam Reticulon 381 535 IPR003388 -
Bma02g00332 560 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 9 284 IPR002225 GO:0003854|GO:0006694|GO:0016616
Bma02g00332 560 Gene3D - 2 359 - -
Bma02g00332 560 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 5 366 - -
Bma02g00332 560 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 356 IPR036291 -
Bma02g00332 560 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 366 - -
Bma02g00332 560 ProSiteProfiles Reticulon domain profile. 380 540 IPR003388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00332 K23558 3BETAHSDD; plant 3beta-hydroxysteroid-4alpha-carboxylate 3-dehydrogenase [EC:1.1.1.418] - mnt:21401592 830.091
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00332 Bma04g00296 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00332 Bma-Chr2:4693439 Bma06g01439 Bma-Chr6:51091846 8.81E-130 dispersed
Bma02g00332 Bma-Chr2:4693439 Bma13g00919 Bma-Chr13:39612345 7.31E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g182 . . . . . . Bma04g00296 . . . . . . . . . . Bhi04g01534 Tan02g1571 . . Hepe08g1449 . Lcy13g2234 . . . . . . . . . Cone17ag0956 Cone20ag0300 . . . . Blo17g00268 . . Bda13g01581 Bpe14g00288 . . Bma02g00332 . . . . . . Car05g00887 . . . . . . . . . Cla08g00977 Cam08g1426 Cec08g1004 Cco08g1126 Clacu08g1131 . Cre08g0914 Lsi08g00824 . Chy03g00646 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008574 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00332 Bma_Chr02 FPKM 5.468758 5.865098 6.547129 6.248918 5.043269 5.290205 5.695782 7.660971 8.381162 9.404609