Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00333 ATGGGTGGTCGTGAAGTTGAGGTGATAAACAACAAAGGGTGTTCTAGAATTTTTGTTGGGTCTTCATCTACGTTGTGTTCCTTCAGAGGTACTCAACCATTAGAGCCAATGTCTCCTGCTTCATCCTCTCTGGTGTCTGAACCGGAGAAACCTCTATCAAACGGTCCATTTACCGGACTCATTATCTGCGTTACCGGTTTGTCCAAAGAAGCACGGAAACAAGTGATGGAAGCAACTGAGAGATTAGGCGGTCGGTACAGCCCCAACTTGCATCCTCAATGTACTCACTTGGTGGTCCAAAGCTCGTGTGGACGCAAATTTGATCATGCTTTGATGCATGGATCGAGAAATGGACTCTTTGTTGTTACAATCGGGTGGTTTGTCGATAGTTGTAAGAGAAACGTGAAGATGAGCGAATCACGATATAGTGTCAAGGGTGTGGAAGAAAATGGTATATTACGCTTATATGGATCGAACAAACCTATTTCCGGATCTGAAAATTCCTGTCTTCCTTTAGGAACCAATGAAAAGAATCATTTTGACACGATTCGAGAACAGCATCCTCCAAATCTTTCTGGTCAATCCTTGTACATTGATAAAAACATTTCTCTTGAGCTTCGAAAAAAGGTTGCTGAAACTGCTGCTAGAGAAGGTGCCTCATTGGTGGACAACTGGTTTGTTGGTTGTAGCACCAGTCACGTGGTTTGTGAAGCGACTTCGATTCAGAATTATCTTGGTCATTCGAGCAGCCTAGTTACGCCAATGTGGATCCTGAAAACAGCGAAGGAAAAACGGGTGCAAAAGTTAGTCCATATGTCTGCTGACTTGGCTAGGCAGGTCGGCATGATGCTTGAAGATTTTCAAAATGACATCGCCAAAGAGGTGATAAATAAGGAAAAGGGTGCTGAAAATGAAAAAAGTTTTAACGGTAAATCAAGTCAAGCAGAACGGGAACAGCTTGTCAACTCAGCTAAAATTGGAGTCAGAAATCGTCGGACTCACCGGATGCAGGTGACTTTTCCTTAG 1026 43.37 MGGREVEVINNKGCSRIFVGSSSTLCSFRGTQPLEPMSPASSSLVSEPEKPLSNGPFTGLIICVTGLSKEARKQVMEATERLGGRYSPNLHPQCTHLVVQSSCGRKFDHALMHGSRNGLFVVTIGWFVDSCKRNVKMSESRYSVKGVEENGILRLYGSNKPISGSENSCLPLGTNEKNHFDTIREQHPPNLSGQSLYIDKNISLELRKKVAETAAREGASLVDNWFVGCSTSHVVCEATSIQNYLGHSSSLVTPMWILKTAKEKRVQKLVHMSADLARQVGMMLEDFQNDIAKEVINKEKGAENEKSFNGKSSQAEREQLVNSAKIGVRNRRTHRMQVTFP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4701531 4704127 + Bma014791.1 Bma02g00333 77583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00333 341 CDD BRCT_TopBP1_rpt2_like 55 134 - -
Bma02g00333 341 Pfam twin BRCT domain 60 126 IPR001357 -
Bma02g00333 341 SMART BRCT_7 54 134 IPR001357 -
Bma02g00333 341 SMART BRCT_7 188 264 IPR001357 -
Bma02g00333 341 ProSiteProfiles BRCT domain profile. 186 266 IPR001357 -
Bma02g00333 341 SUPERFAMILY BRCT domain 49 145 IPR036420 -
Bma02g00333 341 ProSiteProfiles BRCT domain profile. 52 144 IPR001357 -
Bma02g00333 341 Gene3D BRCT domain 55 146 IPR036420 -
Bma02g00333 341 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 4 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00333 - - - pop:7491978 417.157
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g180 . . . . Bpe02g01568 . . . . . . . . . Sed08g1811 . . Bhi04g01532 Tan02g1572 Cmetu03g1762 . Hepe08g1448 . Lcy13g2233 . . . . . . . . . Cone17ag0955 Cone20ag0299 . . . . . Blo18g00254 . Bda13g01582 Bpe14g00286 . . Bma02g00333 . . . . . . Car05g00889 . . . . . . . . . Cla08g00978 Cam08g1427 Cec08g1005 Cco08g1128 Clacu08g1132 . Cre08g0915 Lsi08g00825 . Chy03g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007854 1 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00333 Bma_Chr02 FPKM 0.922636 0.906373 2.931063 3.426149 34.092415 36.352802 37.359051 5.265522 5.123538 4.717893