Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00338 ATGATTTACAGAAAGAGGATGGAAAGAACGCAGGATTATCTGAAGCACTGCCTTCAAGTAGCTCAAGACCATGGCTTTCTACACCTCATTGTCGATAACAAACCCAATGATCAAACCACCCGACGCCGGCCGTCTTTCGACTGTGATCCTCAACTTCCTCCCTCTCCGACTCATCTTCACCCAGAACTCGCCCGCCTCACTCATCAAGCGAAGCTCAACGGCTGGTTAATCCACCCCCACGAGATTGAAATGGAAGAGAAAGTCGGCCAAGGCAGCACTGCAAATGTTTACAGAGGAAGGTGGAGAGGGCTTGAAGTTGCAGTGAAATGCATGTGCCCAGATGTTTTTCTGGAGAGCGACAATGGCGTCGCTTTTTTCGTTCAAGAGCTGGAGACGTTAGCCAGACAGCGCCACCCGTTTGTTCTTCAGCTCATCGGTGCGTGTCTTCACCCGCCAGACCATGCTTGGGTGGTCTCGGAGTTCTTGCCCATGACCCTCAAAGAGTGGCTTCACGGTGCCGACCGCCGGCGGCGAAAGAGGGCCATTCCTCTTCCTCCCTTAACAGAGAGAATAACCAAAGCTCTGGAGATCTCCCAGGCGATGCAGTATCTTCACGAGCAGATACCTAAAGTAATCCACCGAGATTTAAAACCCAGTAATATCTTTCTGGACGATGCCATGCATGTAAAACTTGCAGACTTTGGAAATGCCCGCTTTCTCTCCGACAAAGAAATGGCGCTCACCGGAACTTACGTATACATGGCGCCGGAGGTCATTCGTTGCGAGCCTTACGATGAAAAAAGTGATGTTTACAGCTATGCGATTATACTGAACGAGCTCCTGACCGGAGAACATCCTTATATAGAAACAGATTACTGCACAGCCAAGATTGCCATGGAAGTTGCAGAAGGTAAGGTAAGGCCGGTGCTCGTTGAGGATGATGGGCAAACGGGAGAGATTATTGACCTCATCCGCCTCGCTTGGGATGAAGACGTTTCGATCAGACCATCTTTTGTTACCATCACCTCTGCTCTGACAAAAGTTCATCAGAAACTTCTTCAAGTTTCTTGA 1071 49.49 MIYRKRMERTQDYLKHCLQVAQDHGFLHLIVDNKPNDQTTRRRPSFDCDPQLPPSPTHLHPELARLTHQAKLNGWLIHPHEIEMEEKVGQGSTANVYRGRWRGLEVAVKCMCPDVFLESDNGVAFFVQELETLARQRHPFVLQLIGACLHPPDHAWVVSEFLPMTLKEWLHGADRRRRKRAIPLPPLTERITKALEISQAMQYLHEQIPKVIHRDLKPSNIFLDDAMHVKLADFGNARFLSDKEMALTGTYVYMAPEVIRCEPYDEKSDVYSYAIILNELLTGEHPYIETDYCTAKIAMEVAEGKVRPVLVEDDGQTGEIIDLIRLAWDEDVSIRPSFVTITSALTKVHQKLLQVS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5462517 5463869 - Bma014807.1 Bma02g00338 77588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00338 356 PANTHER OS09G0443600 PROTEIN 2 352 - -
Bma02g00338 356 Gene3D Phosphorylase Kinase; domain 1 64 162 - -
Bma02g00338 356 Pfam Protein kinase domain 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00338 356 MobiDBLite consensus disorder prediction 35 58 - -
Bma02g00338 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Bma02g00338 356 CDD STKc_MAP3K-like 88 345 - -
Bma02g00338 356 ProSiteProfiles Protein kinase domain profile. 82 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00338 356 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 2 352 - -
Bma02g00338 356 SMART serkin_6 82 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00338 356 ProSitePatterns Protein kinases ATP-binding region signature. 88 109 IPR017441 GO:0005524
Bma02g00338 356 Gene3D Transferase(Phosphotransferase) domain 1 183 355 - -
Bma02g00338 356 SUPERFAMILY Protein kinase-like (PK-like) 57 343 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00338 - - - mesc:110603287 494.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00338 Bma-Chr2:5462517 Bma01g02388 Bma-Chr1:81458040 2.46E-43 dispersed
Bma02g00338 Bma-Chr2:5462517 Bma03g00620 Bma-Chr3:5114687 1.72E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g143 . . . . . Bpe02g00332 . . . . . . Car09g00308 . . . Cpe06g00255 . . . . . . . Cla05g01617 Cam05g1730 Cec05g1735 Cco05g1791 Clacu05g1719 Cmu05g1603 Cre05g1730 Cone4ag1692 . . . . . . . Blo17g00274 . . . Bpe14g00279 . . Bma02g00338 . . Cmo09g00582 Cma09g00361 . . . . . Bhi09g03092 . . . . . . . . . . . . . . . . Cme07g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010809 0 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66340 PF00069 Pkinase 9.10E-45 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00338 Bma_Chr02 FPKM 0.0 1.020895 3.580829 3.550475 0.617274 1.315428 2.315694 0.0 0.411677 0.0