Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g00407 | ATGGCTGGAGCAGTTCATCTCATCTCAATCTTTTTAGTTTCATTGGCTTTGTTAGTCCCCACCCTGCATGCTGACATTGCTGAGTTCGATGACTACTGGCTTCATCGAGCCCAGGAAGCCGAGAAGGCGGCTCTCGAGGCCTACCAGCCCGACCCCTTCAATGTCACCGACCAATTCAATATTCATGTTCACAGGGTTGTGGCTGCTAGAGTGGGGACAAACAGCACGAGGAGGAACTTGAGAGGATCAAACAAACACAAAGGTCGATGTGTGGCCACAAATCCAATTGACCGATGCTGGCGGTGCGACAAGAACTGGGCCATGAACCGTAAGCGTCTAGCCAGGTGTGCACTCGGCTTCGGGAGGAGGGCAACCGGAGGACTCAAAGGTCGCATTTACGTCGTCACCGACCCATCAGACTCCAACGTCCTGAACCCTAAACCTGGAACCCTTCGCCACGCAGTGATTCAGAAGCAGCCGCTCTGGATCATCTTCGCAAGGAGCATGGTCATTAAACTCTCGCAGGAGCTCATGATCACGAGCCACAAGACGATCGACGCTCGAGGGGAGAAGGTTCACATCGCTTACGGGGCAGGACTGACTATCCAATTTGTGAGGAATGTTATAATTCATGGGCTTCGTATACATGATATTGTGGCAGCTTCAGGCGGGATGATAAGGGATTCTGTTGAACATTATGGGCTCAGAACAGCCAGTGACGGAGATGGGATTTCTATATTTGGAGCAACCGACGTTTGGCTTGACCATCTTTCCATGTCCAAATGCCAAGATGGATTGATCGACGCCGTTCAAGGATCGACGGCCATCACTATCTCAAATTCCCACTTCACCGAGCACAATGATGTGATGCTGTTCGGCGCCAGCGACGCCTACAGAGGGGACAAGATTATGCAAGTGACGGTGGCGTTCAACCATTTCGGGAAAGGGTTGGTGCAGAGAATGCCGAGATGCAGGTGGGGGTTCGTCCACGTCGTCAACAATGACTATACCCACTGGCTAATGTACGCCATCGGAGGAAGCTCCGAACCCACCATTATCAGCCAAGGCAACCGGTTCTTCGCTCCCCCCAACCTGGCCGCAAAAGAGGTGACGAAGAGAGACTACGCCCCGAAAAGCGTCTGGCAGAACTGGAACTGGCGGTCACAGGGCGACCTGATGAAGAACGGAGCTTTCTTCGTCCAATCTGGAAGGCCGATCAAGCCATTTAGCAGGCACGACATGATCAAAGCCAGGCCCGGGAAATTTGTTGGGAGGCTTACTCGCTTCTCTGGCTCGCTCAGCTGCCGGGTGGGTCGGCCATGTTAG | 1326 | 53.24 | MAGAVHLISIFLVSLALLVPTLHADIAEFDDYWLHRAQEAEKAALEAYQPDPFNVTDQFNIHVHRVVAARVGTNSTRRNLRGSNKHKGRCVATNPIDRCWRCDKNWAMNRKRLARCALGFGRRATGGLKGRIYVVTDPSDSNVLNPKPGTLRHAVIQKQPLWIIFARSMVIKLSQELMITSHKTIDARGEKVHIAYGAGLTIQFVRNVIIHGLRIHDIVAASGGMIRDSVEHYGLRTASDGDGISIFGATDVWLDHLSMSKCQDGLIDAVQGSTAITISNSHFTEHNDVMLFGASDAYRGDKIMQVTVAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSSEPTIISQGNRFFAPPNLAAKEVTKRDYAPKSVWQNWNWRSQGDLMKNGAFFVQSGRPIKPFSRHDMIKARPGKFVGRLTRFSGSLSCRVGRPC | 441 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6245887 | 6247576 | + | Bma014883.1 | Bma02g00407 | 77657 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g00407 | 441 | SUPERFAMILY | Pectin lyase-like | 94 | 431 | IPR011050 | - | |
Bma02g00407 | 441 | PANTHER | PECTATE LYASE | 5 | 441 | - | - | |
Bma02g00407 | 441 | Pfam | Pectate lyase, N terminus | 26 | 80 | IPR007524 | GO:0030570 | |
Bma02g00407 | 441 | SMART | amb_all | 168 | 365 | IPR002022 | - | |
Bma02g00407 | 441 | Gene3D | - | 93 | 434 | IPR012334 | - | |
Bma02g00407 | 441 | Pfam | Pectate lyase | 200 | 359 | IPR002022 | - | |
Bma02g00407 | 441 | PRINTS | Pollen allergen Amb family signature | 384 | 408 | IPR018082 | - | |
Bma02g00407 | 441 | PRINTS | Pollen allergen Amb family signature | 240 | 261 | IPR018082 | - | |
Bma02g00407 | 441 | PRINTS | Pollen allergen Amb family signature | 116 | 133 | IPR018082 | - | |
Bma02g00407 | 441 | PRINTS | Pollen allergen Amb family signature | 342 | 361 | IPR018082 | - | |
Bma02g00407 | 441 | PRINTS | Pollen allergen Amb family signature | 140 | 165 | IPR018082 | - | |
Bma02g00407 | 441 | PRINTS | Pollen allergen Amb family signature | 176 | 192 | IPR018082 | - | |
Bma02g00407 | 441 | PRINTS | Pollen allergen Amb family signature | 320 | 339 | IPR018082 | - | |
Bma02g00407 | 441 | PANTHER | PECTATE LYASE 18-RELATED | 5 | 441 | IPR045032 | GO:0030570 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00083 | Bma-Chr1:818412 | Bma02g00407 | Bma-Chr2:6245887 | 0 | dispersed | |
Bma02g00407 | Bma-Chr2:6245887 | Bma06g00660 | Bma-Chr6:35657954 | 0 | dispersed | |
Bma07g00796 | Bma-Chr7:23965521 | Bma02g00407 | Bma-Chr2:6245887 | 9.47E-155 | transposed | |
Bma01g01025 | Bma-Chr1:10648154 | Bma02g00407 | Bma-Chr2:6245887 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g00407 | K01728 | - | csv:101202789 | 692.96 |