Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00407 ATGGCTGGAGCAGTTCATCTCATCTCAATCTTTTTAGTTTCATTGGCTTTGTTAGTCCCCACCCTGCATGCTGACATTGCTGAGTTCGATGACTACTGGCTTCATCGAGCCCAGGAAGCCGAGAAGGCGGCTCTCGAGGCCTACCAGCCCGACCCCTTCAATGTCACCGACCAATTCAATATTCATGTTCACAGGGTTGTGGCTGCTAGAGTGGGGACAAACAGCACGAGGAGGAACTTGAGAGGATCAAACAAACACAAAGGTCGATGTGTGGCCACAAATCCAATTGACCGATGCTGGCGGTGCGACAAGAACTGGGCCATGAACCGTAAGCGTCTAGCCAGGTGTGCACTCGGCTTCGGGAGGAGGGCAACCGGAGGACTCAAAGGTCGCATTTACGTCGTCACCGACCCATCAGACTCCAACGTCCTGAACCCTAAACCTGGAACCCTTCGCCACGCAGTGATTCAGAAGCAGCCGCTCTGGATCATCTTCGCAAGGAGCATGGTCATTAAACTCTCGCAGGAGCTCATGATCACGAGCCACAAGACGATCGACGCTCGAGGGGAGAAGGTTCACATCGCTTACGGGGCAGGACTGACTATCCAATTTGTGAGGAATGTTATAATTCATGGGCTTCGTATACATGATATTGTGGCAGCTTCAGGCGGGATGATAAGGGATTCTGTTGAACATTATGGGCTCAGAACAGCCAGTGACGGAGATGGGATTTCTATATTTGGAGCAACCGACGTTTGGCTTGACCATCTTTCCATGTCCAAATGCCAAGATGGATTGATCGACGCCGTTCAAGGATCGACGGCCATCACTATCTCAAATTCCCACTTCACCGAGCACAATGATGTGATGCTGTTCGGCGCCAGCGACGCCTACAGAGGGGACAAGATTATGCAAGTGACGGTGGCGTTCAACCATTTCGGGAAAGGGTTGGTGCAGAGAATGCCGAGATGCAGGTGGGGGTTCGTCCACGTCGTCAACAATGACTATACCCACTGGCTAATGTACGCCATCGGAGGAAGCTCCGAACCCACCATTATCAGCCAAGGCAACCGGTTCTTCGCTCCCCCCAACCTGGCCGCAAAAGAGGTGACGAAGAGAGACTACGCCCCGAAAAGCGTCTGGCAGAACTGGAACTGGCGGTCACAGGGCGACCTGATGAAGAACGGAGCTTTCTTCGTCCAATCTGGAAGGCCGATCAAGCCATTTAGCAGGCACGACATGATCAAAGCCAGGCCCGGGAAATTTGTTGGGAGGCTTACTCGCTTCTCTGGCTCGCTCAGCTGCCGGGTGGGTCGGCCATGTTAG 1326 53.24 MAGAVHLISIFLVSLALLVPTLHADIAEFDDYWLHRAQEAEKAALEAYQPDPFNVTDQFNIHVHRVVAARVGTNSTRRNLRGSNKHKGRCVATNPIDRCWRCDKNWAMNRKRLARCALGFGRRATGGLKGRIYVVTDPSDSNVLNPKPGTLRHAVIQKQPLWIIFARSMVIKLSQELMITSHKTIDARGEKVHIAYGAGLTIQFVRNVIIHGLRIHDIVAASGGMIRDSVEHYGLRTASDGDGISIFGATDVWLDHLSMSKCQDGLIDAVQGSTAITISNSHFTEHNDVMLFGASDAYRGDKIMQVTVAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSSEPTIISQGNRFFAPPNLAAKEVTKRDYAPKSVWQNWNWRSQGDLMKNGAFFVQSGRPIKPFSRHDMIKARPGKFVGRLTRFSGSLSCRVGRPC 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6245887 6247576 + Bma014883.1 Bma02g00407 77657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00407 441 SUPERFAMILY Pectin lyase-like 94 431 IPR011050 -
Bma02g00407 441 PANTHER PECTATE LYASE 5 441 - -
Bma02g00407 441 Pfam Pectate lyase, N terminus 26 80 IPR007524 GO:0030570
Bma02g00407 441 SMART amb_all 168 365 IPR002022 -
Bma02g00407 441 Gene3D - 93 434 IPR012334 -
Bma02g00407 441 Pfam Pectate lyase 200 359 IPR002022 -
Bma02g00407 441 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Bma02g00407 441 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Bma02g00407 441 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Bma02g00407 441 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Bma02g00407 441 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Bma02g00407 441 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Bma02g00407 441 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Bma02g00407 441 PANTHER PECTATE LYASE 18-RELATED 5 441 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00083 Bma-Chr1:818412 Bma02g00407 Bma-Chr2:6245887 0 dispersed
Bma02g00407 Bma-Chr2:6245887 Bma06g00660 Bma-Chr6:35657954 0 dispersed
Bma07g00796 Bma-Chr7:23965521 Bma02g00407 Bma-Chr2:6245887 9.47E-155 transposed
Bma01g01025 Bma-Chr1:10648154 Bma02g00407 Bma-Chr2:6245887 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00407 K01728 - csv:101202789 692.96