Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00408 TTAGAAGAGATGGAAACGGCAATACTGAAAAATGAAGAGAAACTGGGGAAAAGACGCCAATTTTGGTTGCCGGAAAACGAGACCGAGTCTCTGCGATGTGTCAAAAGACGGCGAAGAAGCCGAGTGGCCAGTGCAGCTCCGGTTGGTTGTGATGAGAGCCAGAATCAAAGTCAGAGTCAGAAGCAGCAAGTTGATCAAATTCCAGCTGCCACCACAACCAAGAGAAGTTCAAGATTTCGAGGTGTAAGCAGACATAGATGGACTGGTCGATACGAAGCTCATTTGTGGGACAAGCTGTCATGGAATATTACACAGAAAAAGAAGGGGAAACAAGGAGCTTATGATGACGAAGAATCTGCAGCACGAGCATATGATTTAGCCGCACTGAAATACTGGGGGACGTCTACTTTCACCAATTTTCCTGTATCGGAATACGAAAACGAGGTAAAAATTATGCAGCCATTGACAAAAGAGGAGTATCTTGCCTCTTTAAGAAGGTTTGATTTCCAACTCAAGTCATATTTCTATATCCTCTTTCATTCCATAACACATTTTCCTTTTTTGGGGCTCAGGAAGAGCAGTGGATTCTCGAGAGGTGTATCGAAGTACAGGGGAGTTGCAAGGCATCATCATAATGGTAGATGGGAGGCTAGAATAGGAAGAGTTTTTGGAAATAAATATCTCTATCTTGGCACTTACGGTACCCAAGAGGAAGCTGCTCGTGCCTATGACATAGCAGCGATTGAGTACAGAGGAAACAATGCCATCACAAATTTCGACCTGAGTTCATATATGAGATGGTTAAAGCCAGAATCAGACAACGAAAATGCAGAATATGAAGCACAAAGAGCCCCTGAGCCAGAAAATGGGACAAATTATCAGCAATCACTAGAATTTCCCTCCTTCAGCAATGATTATTCTGGCTCTGTCTACTTCAACTCTAATCAAAAGCAAGATATTTGTCAAGGCTCACTCAATAAGTCTTCTTCCCCCACTGCACTTAGTATCCTCCTCAGATCTTCCATGTTCAGAGATTTGGTTGAGAAGAACTTACATGTCTCTGATGATGAAGCCGGTGAAGAAGAGCAGAAGATTCTGGCAAGTGAGGAAGATGAGTGTGAAAGAATAATAGCAGAACTTTTCATGGTATGA 1152 42.71 LEEMETAILKNEEKLGKRRQFWLPENETESLRCVKRRRRSRVASAAPVGCDESQNQSQSQKQQVDQIPAATTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQGAYDDEESAARAYDLAALKYWGTSTFTNFPVSEYENEVKIMQPLTKEEYLASLRRFDFQLKSYFYILFHSITHFPFLGLRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGNNAITNFDLSSYMRWLKPESDNENAEYEAQRAPEPENGTNYQQSLEFPSFSNDYSGSVYFNSNQKQDICQGSLNKSSSPTALSILLRSSMFRDLVEKNLHVSDDEAGEEEQKILASEEDECERIIAELFMV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6248953 6250678 + Bma014884.1 Bma02g00408 77658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00408 383 ProSiteProfiles AP2/ERF domain profile. 202 260 IPR001471 GO:0003700|GO:0006355
Bma02g00408 383 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 191 376 - -
Bma02g00408 383 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 166 - -
Bma02g00408 383 Gene3D AP2/ERF domain 77 143 IPR036955 GO:0003700|GO:0006355
Bma02g00408 383 Gene3D AP2/ERF domain 201 262 IPR036955 GO:0003700|GO:0006355
Bma02g00408 383 ProSiteProfiles AP2/ERF domain profile. 78 141 IPR001471 GO:0003700|GO:0006355
Bma02g00408 383 SUPERFAMILY DNA-binding domain 77 143 IPR016177 GO:0003677
Bma02g00408 383 CDD AP2 201 262 IPR001471 GO:0003700|GO:0006355
Bma02g00408 383 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 12 166 - -
Bma02g00408 383 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 191 376 - -
Bma02g00408 383 MobiDBLite consensus disorder prediction 36 80 - -
Bma02g00408 383 CDD AP2 77 143 IPR001471 GO:0003700|GO:0006355
Bma02g00408 383 Pfam AP2 domain 201 252 IPR001471 GO:0003700|GO:0006355
Bma02g00408 383 Pfam AP2 domain 77 133 IPR001471 GO:0003700|GO:0006355
Bma02g00408 383 SMART rav1_2 78 147 IPR001471 GO:0003700|GO:0006355
Bma02g00408 383 SMART rav1_2 202 266 IPR001471 GO:0003700|GO:0006355
Bma02g00408 383 MobiDBLite consensus disorder prediction 49 77 - -
Bma02g00408 383 SUPERFAMILY DNA-binding domain 201 262 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00408 Bma-Chr2:6248953 Bma15g00429 Bma-Chr15:4647271 2.76E-90 dispersed
Bma02g00408 Bma-Chr2:6248953 Bma07g01409 Bma-Chr7:49858960 4.12E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56866 PF00847 AP2 5.50E-09 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00408 - - tcc:18601455 415.231