Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00414 ATGGCAGAAGCAGTAGAAGGTAAAGCGTTGCCTGAGACCGAGAAGAAGAAGGAGCAGACTCTACCCTTTTACCAGCTCTTCTCTTTTGCTGACAAATATGACTGCTTCCTCATGATCCTTGGGAGCGTGGGAGCCATTATTCATGGCGCTTCCATGCCAGTTTTCTTCCTCTTGTTTGGTGAAATGGTTAACGGGTTTGGTAAAAATCAGATGGATTTGAAGAAAATGACCGAAGAGGTCTCCAAGTACGCACTTTATTTTGTGTATTTCGGCATCGTCGTGTGCTTCTCATCTTACGCAGAAATTGGATGCTGGATGTATACCGGGGAGAGACAGGCGATCACTCTGAGGAAGAAGTATTTGGAGGCGGTTTTGAAGCAAGACGTCGGATTCTTTGACACGGATGCAAGAACAGGGGATGTTGTTTTCAGTGTTTCAACGGACACTCTTCTAGTCCAAGACGCCATTAGCGAGAAGGTGGGCAATTTCATTCACTATCTTTCGACATTTTTGGCCGGACTAGTGGTGGGTTTTGTCTCGGCATGGAGGCTAGCCCTACTGAGTGTCGCTGTTATTCCCGGAATTGCCTTTGCTGGGGGCTTATATGCTTACACTCTCACAGGCCTCACTTCGAAGAGTCGACAATCCTACGCCAACGCCGGCATAATCGCCGAGCAGGCCATAGCGCAGGTTAGGACTGTCTATTCGTATGTTGGGGAGAGCAAGGCCCTGAATGCTTATTCTGATGCGATACAGAATACATTGAAGCTTGGATATAAAGCAGGAATGGCGAAAGGGTTGGGTTTAGGATGTACTTACGGAATTGCTTGTATGTCTTGGGCTCTTGTTTTCTGGTACGCCGGAGTTTTTATTCGAAACGGCCAGACCGACGGTGGGAAAGCCTTTACGGCAATTTTCTCGGCCATCGTGGGTGGAATGAGTTTGGGTCAGTCATTTTCAAATCTCGGTGCATTTAGCAAAGGCAAAGCGGCCGGATACAAGTTAATGGAGATTATCAACCAAAAACCTTCTATAAATCAAGATCCTCTGGAAGGAAAATGCTTGGCCGAAGTTAATGGCAATATAGAGTTTAAGAATGTTACTTTCAGCTATCCGTCCAGGCCGGATGTTGTCATTTTCCGGGACTTTTCTATATTCTTCCCTGCCGGAAAAACTGTTGCCGTTGTAGGTGGCAGCGGATCTGGCAAAAGCACTGTTGTTTCTCTAATCGAAAGATTTTACGATCCCAATCAGGGTCAGGTTTTATTGGATAATGTCGATATAAAAACACTGCAGCTGAAATGGCTACGTGATCAGATAGGATTAGTGAACCAGGAGCCTGCCCTCTTCGCAACGACAATTCTCGAAAATATACTCCATGGGAAGCCTGATGCGACCATGGCAGAAGTTGAGGCCGCTGCATCTGCAGCAAACGCTCATAGCTTCGTCAACCTTCTTCCTAATGGCTACAACACTCAGGTAGGAGAGCGTGGGGTCCAACTTTCCGGTGGCCAAAAACAGAGAATTGCCATAGCCAGGGCAATGCTGAAAGATCCTAAGATCCTTCTTCTTGATGAGGCGACAAGTGCCCTCGATGCAGGCTCTGAGAGCATTGTTCAAGAGGCTTTAGATCGATTAATGGTGGGAAGAACAACAGTGGTGGTAGCTCATCGTCTTTCGACGATAAGAAATGTTGACACAATTGCAGTAATTCAACAGGGGCAAGTAGTCGAATCCGGGACTCACGAAGAACTCATTTCGAAAGCAGGGGCCTACGCCTCACTAATCCGATTCCAAGAAATCGTTAGAAACAAAGATTTTTCGAATCCTTCGACCCGCCGATCACGATCGTCTCGGCTAAGCCACTCGCTGTCGACAAAGTCGTTGAGCCTCCGGTCCGGCAGTCTGAGGAATTTGAGCTATTCCTACAGTACTGGAGCCGATGGGAGGATAGAGATGGTGTCGAATGCTGAATCTGATAAGAAAAATCCTGCCCCGGCTGATTACTTTTTCCGGCTTCTGAAATTGAACGCACCCGAATGGCCATACTCGATCATGGGTGCAATAGGGTCTGTTCTTTCAGGATTCATCGGTCCAACTTTTGCGATTGTGATGAGCTACATGATCGAGGTTTTTTACTACAGAAACGGAGCTGCCATGGAGAAAAAATCAAAGGAATACGTCTTCATTTACATCGGAGTTGGTGTTTATGCTGTGTTTGCGTACCTAATTCAGCATTATTTCTTTAGCATTATGGGAGAGAATCTGACTACCAGAGTGAGAAGAATGATGCTGGCAGCGATTTTAAGGAATGAAGTAGGATGGTTCGACGAAGAGGAGCATAATTCAAGCTTGTTAGCTGCCCGATTAGCCACAGATGCAGCTGATGTGAAATCCGCCATTGCAGAGCGAATCTCTGTAATTTTGCAAAACATGACGTCACTTCTCACTTCCTTTATTGTCGCCTTCATTATCGAGTGGAGGGTCTCCCTTCTCATCCTCGCGACCTTCCCTCTCCTGGTCCTCGCCAACTTTGCCCAGCAACTGTCTCTCAAGGGTTTCGCCGGAGACACGGCCAAAGCCCATGCAAAGACGAGCATGATTGCCGGAGAGGGAGTGAGCAATATCAGAACAGTGGCAGCCTTCAATGCTCAGGCCAAGATTCTCTCCCTCTTCAGCCATCAACTCAGAGTTCCTCTCCGCCGGAGCTTCCGCCGGAGCCAAACTGCCGGCCTTCTCTTTGGTCTTTCTCAGCTTGCCCTTTACGCCTCCGAAGCCCTAGTTCTCTGGTATGGCGTTCACCTTGTCAAGAGAGGAATCTCGACTTTCTCACAAGTCATCAAAGTTTTTGTTGTCCTAGTCGTCACTGCAAATTCAGTAGCGGAAACTGTCAGTCTTGCTCCGGAAATCATCAGGGGCGGGGAAGCCGTCGGTTCCGTCTTCTCAATTCTCGATCGGTCCACCAAGATTTACCCGGACGATCCAGAAGCGGACATGGTCGAATCGATCCGAGGCGAAATCGAGCTTCGTCATGTCGATTTCGCCTACCCATCCCGGCCTGATGTCATGGTTTTCAAAGACCTCAATTTGAGAATACGAGCGGCCAGAGCCAAGCGCTTGTTGGGGCCAGTGGCTCAGGAAAAAGCTCCATCATTGCATTGGTGGAGAGGTTCTACGACCCGATCGCCGGAAAAGTTATGA 3201 48.08 MAEAVEGKALPETEKKKEQTLPFYQLFSFADKYDCFLMILGSVGAIIHGASMPVFFLLFGEMVNGFGKNQMDLKKMTEEVSKYALYFVYFGIVVCFSSYAEIGCWMYTGERQAITLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRQSYANAGIIAEQAIAQVRTVYSYVGESKALNAYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPSINQDPLEGKCLAEVNGNIEFKNVTFSYPSRPDVVIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILHGKPDATMAEVEAAASAANAHSFVNLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVESGTHEELISKAGAYASLIRFQEIVRNKDFSNPSTRRSRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAESDKKNPAPADYFFRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMSYMIEVFYYRNGAAMEKKSKEYVFIYIGVGVYAVFAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLLAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIIEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQAKILSLFSHQLRVPLRRSFRRSQTAGLLFGLSQLALYASEALVLWYGVHLVKRGISTFSQVIKVFVVLVVTANSVAETVSLAPEIIRGGEAVGSVFSILDRSTKIYPDDPEADMVESIRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAARAKRLLGPVAQEKAPSLHWWRGSTTRSPEKL 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6328869 6334126 - Bma014895.1 Bma02g00414 77664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00414 1066 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 335 - -
Bma02g00414 1066 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 39 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma02g00414 1066 SUPERFAMILY ABC transporter transmembrane region 26 343 IPR036640 GO:0005524|GO:0016021
Bma02g00414 1066 Gene3D ABC transporter type 1, transmembrane domain 974 996 IPR036640 GO:0005524|GO:0016021
Bma02g00414 1066 Gene3D ABC transporter type 1, transmembrane domain 25 973 IPR036640 GO:0005524|GO:0016021
Bma02g00414 1066 SMART AAA_5 389 575 IPR003593 -
Bma02g00414 1066 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Bma02g00414 1066 SUPERFAMILY ABC transporter transmembrane region 666 986 IPR036640 GO:0005524|GO:0016021
Bma02g00414 1066 Pfam ABC transporter 382 529 IPR003439 GO:0005524
Bma02g00414 1066 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 14 1048 IPR039421 -
Bma02g00414 1066 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Bma02g00414 1066 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Bma02g00414 1066 CDD ABC_MTABC3_MDL1_MDL2 362 599 - -
Bma02g00414 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 599 IPR027417 -
Bma02g00414 1066 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma02g00414 1066 Gene3D - 997 1042 IPR027417 -
Bma02g00414 1066 Gene3D - 352 600 IPR027417 -
Bma02g00414 1066 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 14 1048 - -
Bma02g00414 1066 Pfam ABC transporter transmembrane region 685 956 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma02g00414 1066 Pfam ABC transporter transmembrane region 38 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00414 Bma-Chr2:6328869 Bma04g01624 Bma-Chr4:52180902 7.61E-116 dispersed
Bma02g00414 Bma-Chr2:6328869 Bma14g01520 Bma-Chr14:30711352 1.74E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00414 K05658 - gmx:100797124 1774.99