Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00421 ATGGAAGTAGCTCCGACTCCGATTGCCACCATTAATAGCGGGGTTAAATCTCCGGAAGCTGATTCTGAAACCCCGACGAAGATCCAACCGGTTGGAAAGCTTTCACCTTTCAGCAACGGCGTCCTCAAGCGTCACGGTTATGCGGCTTCTCCCGTGTCTTACAAAGAATGTCTGAAAAATCACGCTGCTAGCATCGGTTCTCACGCTTTGGATGGGTGTGGAGAGTTTATGCCCTCTCCTTCCGCCGCTTCTAATGACCCTTTTTCTCTCAAATGCGCCGCCTGCGGTTGTCACCGGAACTTCCACCGCCGTGAGCCGGAAGATCAGCCACTTTCTGCTGCCATTTCCACGCATGTAATCGAATATCAGCCGCACCACCGCCATCACCCGCCTCCGCCGCTACATCCGCCCTCCAACCGCAGCCCGAATTCTTCCTCGCCACCTCCAATCTCCTCCTCTTACTACCCCTCAGCCCCACACATGCTTCTCGCTCTGTCGGCCGGACTGTCAGCTCATCCCGAAATTGCACCGGCAATGGTCTCTCCAACGACCGCGAGAAAAAGATTCAGAACAAAATTCAGCACAGATCAGAAAGAGAAGATGCACGAGTTTGCCGAAAAACTGGGGTGGAAATTTCAGAAGAGAGACGAAGAACTGGTTCGAGAATTCTGCAGTGAAGTCGGAGTAGAGAAAGGAGTTCTCAAAGTCTGGATGCATAACAACAAGAGCGCTTTTGCTAAGAAGGACGTCAATGGCGAAAGGCCGATCCTGCAAAATTCCCAGAACAACGGCAACGACAACTACGAGGAAAACGCCATTAATCACCACCACTCCATGGTTCAGGATCCGAATCACTATCACAACGACGGAAGGCTACATTTTGGCCCTAATGGGTCGTCTTCTTCCTCTTGA 912 51.75 MEVAPTPIATINSGVKSPEADSETPTKIQPVGKLSPFSNGVLKRHGYAASPVSYKECLKNHAASIGSHALDGCGEFMPSPSAASNDPFSLKCAACGCHRNFHRREPEDQPLSAAISTHVIEYQPHHRHHPPPPLHPPSNRSPNSSSPPPISSSYYPSAPHMLLALSAGLSAHPEIAPAMVSPTTARKRFRTKFSTDQKEKMHEFAEKLGWKFQKRDEELVREFCSEVGVEKGVLKVWMHNNKSAFAKKDVNGERPILQNSQNNGNDNYEENAINHHHSMVQDPNHYHNDGRLHFGPNGSSSSS 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6385066 6385977 - Bma014902.1 Bma02g00421 77671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00421 303 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 10 265 - -
Bma02g00421 303 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 186 242 IPR006455 -
Bma02g00421 303 MobiDBLite consensus disorder prediction 270 289 - -
Bma02g00421 303 MobiDBLite consensus disorder prediction 255 269 - -
Bma02g00421 303 MobiDBLite consensus disorder prediction 255 303 - -
Bma02g00421 303 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 265 - -
Bma02g00421 303 SUPERFAMILY Homeodomain-like 177 247 IPR009057 -
Bma02g00421 303 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 105 IPR006456 -
Bma02g00421 303 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Bma02g00421 303 MobiDBLite consensus disorder prediction 123 152 - -
Bma02g00421 303 Pfam ZF-HD protein dimerisation region 52 106 IPR006456 -
Bma02g00421 303 MobiDBLite consensus disorder prediction 10 29 - -
Bma02g00421 303 Gene3D - 178 247 - -
Bma02g00421 303 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00421 - - - jre:108985975 341.658
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00421 Bma13g00147 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00421 Bma-Chr2:6385066 Bma14g01426 Bma-Chr14:27153876 1.33E-101 dispersed
Bma10g00642 Bma-Chr10:9169720 Bma02g00421 Bma-Chr2:6385066 1.31E-35 dispersed
Bma02g00421 Bma-Chr2:6385066 Bma03g00988 Bma-Chr3:10644405 4.20E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1541 Blo10g00133 Blo11g00585 . . . . . Bma13g00147 . . . . . . . . Cpe13g00949 . . . . . . . Cla10g01433 Cam10g1180 Cec10g1514 Cco10g1496 Clacu10g1493 Cmu10g2256 Cre10g1638 . . Cone6ag0586 . . Csa05g02448 . . . . Bda07g01353 Bda12g00161 Bpe11g00081 Bpe11g01458 . Bma02g00421 . . Cmo15g00285 . Cma15g00271 . Car15g00270 . . . . . . . . . . . . . . . . . . Chy09g00254 Cme09g00278
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma09g00128 . 43 233 ZF-HD Transcription Factor Family AT5G65410 54.5 1.2e-49 193.7
Bma01g02594 . 53 246 ZF-HD Transcription Factor Family AT5G65410 52.1 1.3e-45 180.3
Bma01g02594 . 1 242 ZF-HD Transcription Factor Family AT4G24660 52.1 3.1e-56 215.3
Bma09g00128 . 1 229 ZF-HD Transcription Factor Family AT4G24660 51.3 2.9e-54 208.8
Bma05g00124 BCT 91 287 ZF-HD Transcription Factor Family AT4G24660 50.3 1.1e-42 170.2
Bma02g00421 CCT 10 242 ZF-HD Transcription Factor Family AT5G15210 56.5 5.0e-50 194.9
Bma02g00421 CCT 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 4.9e-57 218.4
Bma02g00421 CCT 24 252 ZF-HD Transcription Factor Family AT5G39760 56.0 3.3e-51 199.1
Bma14g01426 . 58 244 ZF-HD Transcription Factor Family AT1G69600 53.6 1.0e-49 193.7
Bma01g02594 . 1 242 ZF-HD Transcription Factor Family AT4G24660 52.1 3.1e-56 215.3
Bma09g00128 . 1 229 ZF-HD Transcription Factor Family AT4G24660 51.3 2.9e-54 208.8
Bma05g00124 BCT 91 287 ZF-HD Transcription Factor Family AT4G24660 50.3 1.1e-42 170.2
Bma02g00421 CCT 24 252 ZF-HD Transcription Factor Family AT5G39760 56.0 3.3e-51 199.1
Bma09g00128 . 43 233 ZF-HD Transcription Factor Family AT5G65410 54.5 1.2e-49 193.7
Bma01g02594 . 53 246 ZF-HD Transcription Factor Family AT5G65410 52.1 1.3e-45 180.3
Bma14g01426 . 58 244 ZF-HD Transcription Factor Family AT1G69600 53.6 1.0e-49 193.7
Bma02g00421 CCT 10 242 ZF-HD Transcription Factor Family AT5G15210 56.5 5.0e-50 194.9
Bma02g00421 CCT 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 4.9e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56869 PF04770 ZF-HD_dimer 1.40E-28 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00421 Bma_Chr02 FPKM 3.195724 3.553178 5.658295 5.395787 0.877231 0.650141 0.645822 0.0 0.0 0.0