Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00421 ATGGAAGTAGCTCCGACTCCGATTGCCACCATTAATAGCGGGGTTAAATCTCCGGAAGCTGATTCTGAAACCCCGACGAAGATCCAACCGGTTGGAAAGCTTTCACCTTTCAGCAACGGCGTCCTCAAGCGTCACGGTTATGCGGCTTCTCCCGTGTCTTACAAAGAATGTCTGAAAAATCACGCTGCTAGCATCGGTTCTCACGCTTTGGATGGGTGTGGAGAGTTTATGCCCTCTCCTTCCGCCGCTTCTAATGACCCTTTTTCTCTCAAATGCGCCGCCTGCGGTTGTCACCGGAACTTCCACCGCCGTGAGCCGGAAGATCAGCCACTTTCTGCTGCCATTTCCACGCATGTAATCGAATATCAGCCGCACCACCGCCATCACCCGCCTCCGCCGCTACATCCGCCCTCCAACCGCAGCCCGAATTCTTCCTCGCCACCTCCAATCTCCTCCTCTTACTACCCCTCAGCCCCACACATGCTTCTCGCTCTGTCGGCCGGACTGTCAGCTCATCCCGAAATTGCACCGGCAATGGTCTCTCCAACGACCGCGAGAAAAAGATTCAGAACAAAATTCAGCACAGATCAGAAAGAGAAGATGCACGAGTTTGCCGAAAAACTGGGGTGGAAATTTCAGAAGAGAGACGAAGAACTGGTTCGAGAATTCTGCAGTGAAGTCGGAGTAGAGAAAGGAGTTCTCAAAGTCTGGATGCATAACAACAAGAGCGCTTTTGCTAAGAAGGACGTCAATGGCGAAAGGCCGATCCTGCAAAATTCCCAGAACAACGGCAACGACAACTACGAGGAAAACGCCATTAATCACCACCACTCCATGGTTCAGGATCCGAATCACTATCACAACGACGGAAGGCTACATTTTGGCCCTAATGGGTCGTCTTCTTCCTCTTGA 912 51.75 MEVAPTPIATINSGVKSPEADSETPTKIQPVGKLSPFSNGVLKRHGYAASPVSYKECLKNHAASIGSHALDGCGEFMPSPSAASNDPFSLKCAACGCHRNFHRREPEDQPLSAAISTHVIEYQPHHRHHPPPPLHPPSNRSPNSSSPPPISSSYYPSAPHMLLALSAGLSAHPEIAPAMVSPTTARKRFRTKFSTDQKEKMHEFAEKLGWKFQKRDEELVREFCSEVGVEKGVLKVWMHNNKSAFAKKDVNGERPILQNSQNNGNDNYEENAINHHHSMVQDPNHYHNDGRLHFGPNGSSSSS 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6385066 6385977 - Bma014902.1 Bma02g00421 77671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00421 303 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 10 265 - -
Bma02g00421 303 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 186 242 IPR006455 -
Bma02g00421 303 MobiDBLite consensus disorder prediction 270 289 - -
Bma02g00421 303 MobiDBLite consensus disorder prediction 255 269 - -
Bma02g00421 303 MobiDBLite consensus disorder prediction 255 303 - -
Bma02g00421 303 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 265 - -
Bma02g00421 303 SUPERFAMILY Homeodomain-like 177 247 IPR009057 -
Bma02g00421 303 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 105 IPR006456 -
Bma02g00421 303 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Bma02g00421 303 MobiDBLite consensus disorder prediction 123 152 - -
Bma02g00421 303 Pfam ZF-HD protein dimerisation region 52 106 IPR006456 -
Bma02g00421 303 MobiDBLite consensus disorder prediction 10 29 - -
Bma02g00421 303 Gene3D - 178 247 - -
Bma02g00421 303 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g00421 Bma13g00147 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00421 Bma-Chr2:6385066 Bma14g01426 Bma-Chr14:27153876 1.33E-101 dispersed
Bma10g00642 Bma-Chr10:9169720 Bma02g00421 Bma-Chr2:6385066 1.31E-35 dispersed
Bma02g00421 Bma-Chr2:6385066 Bma03g00988 Bma-Chr3:10644405 4.20E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56869 PF04770 ZF-HD_dimer 1.40E-28 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00421 - - jre:108985975 341.658