Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00431 ATGCACCCTCACATAATAAGACTCTACGAGGTCATTGAGACACCAGCTGATATTTTAGTTGTGATGGAGTATGTTAAGTTTGGAGAGCTCTTTGATTATATTGTGGAGAAGGGTCGATTGCAGGAAGAAGAAGCTCGAATATTTTTCCAACAGATAATATCTGGCATAGAGTACTGCCACAGGAATTTGCATTCATTCTGTCATATTATTATTACTGTGGTTTTGAGTTTTAGGCCAGGTAGCAGATCTGGTGTTTCTCAATGCATTTTTTCCTACCCCTTCATTTTGCATTATCTATTTATTTTCTTGTTTGATGTTTTAAACTTACAGATTGACGAAGACATTCTCCAAGAAGTGGTGAAAATGGGATTTGACAGAAACCGGCTGTTGGAATCTCTTCTCTACAGAATCCAGAATGAGGCCACAGTCACATATTATTTGTTGCTGGATAGATTCCCAGTCTCTCGCTATCTTGGAGATGAGTTTCAGGAAACAATAGCGGGTTTGAATCTGATTTCAGCTCATCCAAGTGGTGCCACGACTCCAGCTGTCGGACATCGTCTTCCTGGATTTATGGATTATCAAGGGACGGGATTGAGACCACAGTATCCCTTAGAGCGCAAATGGGTGCTTGGATTGCAGGTTTTAAAAAAATGCAAGTGGATACCTGGCTTTCGGGATCATCATGAAGCCATGGTAAATGATCCCGTGCATAGTAATCGCTTTCTTGTTGATGATTCTACCATCATTGAGAATGATGGCGTTTGCAAATCTCCAAACGTTGTCAAGTTTGACGTGCAGCTTTACAAGACAAGGGAGGAGAAGTATCTGCATGATCTGCAGAGAGTTCAAGGTCCTATACGCAAAATGGATCTGGAGGCAAGAAGTTTGCAGCCTAATGTCAAGGCCATTCTTCTGGCTAAGTTAAGGGAATACAAATCAGACCTGAACAATCTTAAAAGTGAAGTTAAACGAATTGGATCTGGTAACTCATATGCATCCGCTCGGGATGAATTATTGGAATCTGGAATGGCCGATACATTGACTGCATCAGCTGATCAAAGGTCACGATTGATGATGGCAACTGAGAGATTAAATTTTTCTGGTGACAGAATTAAGGAAAGTCGAAGAACCATGCTTGAAACAGAAGATCTTGGTGTTTCAATTCTTCAAGACTTGCATTCACAAAGGCAGTCTCTCTTGCATGCTAATAACACGCTTCATGGGGTGGATGACAACATTTGGAAGAGTAAGAAAATTTTGACCAACATCTCAAGGAGAATGAACAGAAACAAGTGGATTATTGTGACTATTGTTGCTGTCCTCGTTATTGTCATTGCTATAATATTGTACTTCAAACTAAAGTAA 1368 40.28 MHPHIIRLYEVIETPADILVVMEYVKFGELFDYIVEKGRLQEEEARIFFQQIISGIEYCHRNLHSFCHIIITVVLSFRPGSRSGVSQCIFSYPFILHYLFIFLFDVLNLQIDEDILQEVVKMGFDRNRLLESLLYRIQNEATVTYYLLLDRFPVSRYLGDEFQETIAGLNLISAHPSGATTPAVGHRLPGFMDYQGTGLRPQYPLERKWVLGLQVLKKCKWIPGFRDHHEAMVNDPVHSNRFLVDDSTIIENDGVCKSPNVVKFDVQLYKTREEKYLHDLQRVQGPIRKMDLEARSLQPNVKAILLAKLREYKSDLNNLKSEVKRIGSGNSYASARDELLESGMADTLTASADQRSRLMMATERLNFSGDRIKESRRTMLETEDLGVSILQDLHSQRQSLLHANNTLHGVDDNIWKSKKILTNISRRMNRNKWIIVTIVAVLVIVIAIILYFKLK 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6501342 6507010 - Bma014913.1 Bma02g00431 77681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00431 455 Pfam Snare region anchored in the vesicle membrane C-terminus 363 428 - -
Bma02g00431 455 Gene3D - 352 432 - -
Bma02g00431 455 CDD UBA_SnRK1_plant 111 150 - -
Bma02g00431 455 CDD SNARE_Vti1 362 423 - -
Bma02g00431 455 ProSiteProfiles Protein kinase domain profile. 1 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00431 455 SMART uba_6 112 149 IPR015940 -
Bma02g00431 455 Gene3D Transferase(Phosphotransferase) domain 1 1 71 - -
Bma02g00431 455 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 150 IPR015940 -
Bma02g00431 455 Coils Coil 302 322 - -
Bma02g00431 455 Pfam Vesicle transport v-SNARE protein N-terminus 281 325 IPR007705 GO:0006886|GO:0016020
Bma02g00431 455 SUPERFAMILY Protein kinase-like (PK-like) 2 68 IPR011009 -
Bma02g00431 455 Pfam Protein kinase domain 2 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00431 455 Gene3D - 270 334 IPR038407 -
Bma02g00431 455 SUPERFAMILY KA1-like 190 287 IPR028375 -
Bma02g00431 455 PANTHER VESICLE TRANSPORT V-SNARE 13-LIKE 283 454 - -
Bma02g00431 455 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 283 454 - -
Bma02g00431 455 SUPERFAMILY t-snare proteins 280 326 IPR010989 GO:0016020|GO:0016192
Bma02g00431 455 SUPERFAMILY SNARE fusion complex 367 424 - -
Bma02g00431 455 Pfam UBA/TS-N domain 111 147 IPR015940 -
Bma02g00431 455 Gene3D - 108 151 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g00431 Bma14g01450 CCT
Bma02g00431 Bma14g01450 ECH
Bma01g01053 Bma02g00431 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00431 Bma-Chr2:6501342 Bma03g00525 Bma-Chr3:4082641 1.20E-17 dispersed
Bma03g00283 Bma-Chr3:2101564 Bma02g00431 Bma-Chr2:6501342 6.37E-69 transposed
Bma01g01053 Bma-Chr1:11050491 Bma02g00431 Bma-Chr2:6501342 1.40E-29 wgd
Bma14g01450 Bma-Chr14:27923396 Bma02g00431 Bma-Chr2:6501342 1.83E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66344 PF12352 V-SNARE_C 5.40E-20 CL0147 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00431 K08493 - tcc:18601570 271.166