Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00452 ATGGGGAGAGGAAGAGTAGAACTCAAGAGGATAGAGAACAAGATAAACAGGCAGGTGACATTTGCAAAGAGGAGAAATGGGCTTTTTAAGAAAGCCTACGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATTATCTTCTCCAATCGTGGCAAGCTCTATGAATTCTGCAGCAGCTCTAACATGCTTAAAACCCTGGAAAGGTACCAAAAATGTAGCTATGGCGCGGTGGAAGTCAACAGACCTTGCAAGGAACTTGAGAGCAGCTACAGAGAGTACTTGAAGTTGAAATCCAGATTTGAGTCCCTACAAAGAACTCAAAGAAATCTGCTTGGGGAAGAATTGGGTCCCTTGAACTCAAAAGAGCTTGAACAGCTTGAGCGTCAGCTGGAAGCATCCTTAAAGCAAGTCAGATCCACCAAGACCCAGTTCATGCTTGATCAGCTTTCTGATCTTCAAACCAAGGAACAAATGCTGATGGAAGCCAACAGAGCTTTGTCTATAAAGCTAGATGAAATCAGTTCAAGAAATCAGCTAAGGCCAGCTTGGGAAGGTGGGGATCAAAATATATCATATGGATCTCAGAGTGCCCAAACTCAAGGATTCTTCCAGCCTCTGGACTGCAATCCCACTTTGCAAATCGGATACAGTGGTGCCGACGAGATGGCTGCAACTGGCGCATCTCATGGCCAGCAAATCACTGGATTTCTACCTGGATGGATGCTCTGA 732 45.22 MGRGRVELKRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLERYQKCSYGAVEVNRPCKELESSYREYLKLKSRFESLQRTQRNLLGEELGPLNSKELEQLERQLEASLKQVRSTKTQFMLDQLSDLQTKEQMLMEANRALSIKLDEISSRNQLRPAWEGGDQNISYGSQSAQTQGFFQPLDCNPTLQIGYSGADEMAATGASHGQQITGFLPGWML 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6954226 6961071 + Bma014935.1 Bma02g00452 77702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00452 243 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 226 - -
Bma02g00452 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma02g00452 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma02g00452 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bma02g00452 243 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bma02g00452 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma02g00452 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma02g00452 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma02g00452 243 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma02g00452 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma02g00452 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma02g00452 243 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Bma02g00452 243 Coils Coil 121 144 - -
Bma02g00452 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma02g00452 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01079 Bma-Chr1:11388175 Bma02g00452 Bma-Chr2:6954226 3.16E-169 dispersed
Bma02g00452 Bma-Chr2:6954226 Bma02g01245 Bma-Chr2:54543470 2.29E-105 dispersed
Bma09g00098 Bma-Chr9:2633901 Bma02g00452 Bma-Chr2:6954226 1.04E-31 dispersed
Bma05g01120 Bma-Chr5:49986424 Bma02g00452 Bma-Chr2:6954226 2.59E-77 transposed
Bma01g01093 Bma-Chr1:11526000 Bma02g00452 Bma-Chr2:6954226 3.16E-169 wgd
Bma14g01058 Bma-Chr14:12791783 Bma02g00452 Bma-Chr2:6954226 9.09E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56871 PF01486 K-box 6.30E-27 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00452 K09264 - csv:101208204 411.764