Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g00452 | ATGGGGAGAGGAAGAGTAGAACTCAAGAGGATAGAGAACAAGATAAACAGGCAGGTGACATTTGCAAAGAGGAGAAATGGGCTTTTTAAGAAAGCCTACGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATTATCTTCTCCAATCGTGGCAAGCTCTATGAATTCTGCAGCAGCTCTAACATGCTTAAAACCCTGGAAAGGTACCAAAAATGTAGCTATGGCGCGGTGGAAGTCAACAGACCTTGCAAGGAACTTGAGAGCAGCTACAGAGAGTACTTGAAGTTGAAATCCAGATTTGAGTCCCTACAAAGAACTCAAAGAAATCTGCTTGGGGAAGAATTGGGTCCCTTGAACTCAAAAGAGCTTGAACAGCTTGAGCGTCAGCTGGAAGCATCCTTAAAGCAAGTCAGATCCACCAAGACCCAGTTCATGCTTGATCAGCTTTCTGATCTTCAAACCAAGGAACAAATGCTGATGGAAGCCAACAGAGCTTTGTCTATAAAGCTAGATGAAATCAGTTCAAGAAATCAGCTAAGGCCAGCTTGGGAAGGTGGGGATCAAAATATATCATATGGATCTCAGAGTGCCCAAACTCAAGGATTCTTCCAGCCTCTGGACTGCAATCCCACTTTGCAAATCGGATACAGTGGTGCCGACGAGATGGCTGCAACTGGCGCATCTCATGGCCAGCAAATCACTGGATTTCTACCTGGATGGATGCTCTGA | 732 | 45.22 | MGRGRVELKRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLERYQKCSYGAVEVNRPCKELESSYREYLKLKSRFESLQRTQRNLLGEELGPLNSKELEQLERQLEASLKQVRSTKTQFMLDQLSDLQTKEQMLMEANRALSIKLDEISSRNQLRPAWEGGDQNISYGSQSAQTQGFFQPLDCNPTLQIGYSGADEMAATGASHGQQITGFLPGWML | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6954226 | 6961071 | + | Bma014935.1 | Bma02g00452 | 77702 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g00452 | 243 | PANTHER | DEVELOPMENTAL PROTEIN SEPALLATA 1 | 1 | 226 | - | - | |
Bma02g00452 | 243 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00452 | 243 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00452 | 243 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Bma02g00452 | 243 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Bma02g00452 | 243 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00452 | 243 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00452 | 243 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00452 | 243 | Pfam | K-box region | 87 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma02g00452 | 243 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00452 | 243 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma02g00452 | 243 | SUPERFAMILY | SRF-like | 2 | 76 | IPR036879 | GO:0003677|GO:0046983 | |
Bma02g00452 | 243 | Coils | Coil | 121 | 144 | - | - | |
Bma02g00452 | 243 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma02g00452 | 243 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01079 | Bma-Chr1:11388175 | Bma02g00452 | Bma-Chr2:6954226 | 3.16E-169 | dispersed | |
Bma02g00452 | Bma-Chr2:6954226 | Bma02g01245 | Bma-Chr2:54543470 | 2.29E-105 | dispersed | |
Bma09g00098 | Bma-Chr9:2633901 | Bma02g00452 | Bma-Chr2:6954226 | 1.04E-31 | dispersed | |
Bma05g01120 | Bma-Chr5:49986424 | Bma02g00452 | Bma-Chr2:6954226 | 2.59E-77 | transposed | |
Bma01g01093 | Bma-Chr1:11526000 | Bma02g00452 | Bma-Chr2:6954226 | 3.16E-169 | wgd | |
Bma14g01058 | Bma-Chr14:12791783 | Bma02g00452 | Bma-Chr2:6954226 | 9.09E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56871 | PF01486 | K-box | 6.30E-27 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g00452 | K09264 | - | csv:101208204 | 411.764 |