Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00460 ATGTTGAAAACTGAAGTCAATGCTACCAATGGCGACGAAGACGGCGACGGTGGAACTACCGGAGGCTGTAATAGTTGGGGACGAGTCTGCGATACTTGTCGGTCGGCCGCGTGTACAGTCTACTGCAGAGCTGATTCAGCGTTCCTATGCTCCGATTGCGACGCTCGAATCCACGCGGCTAACCGCGTTGCCTCTCGCCACGAGCGAGTCTTTGTATGTGAGGCGTGCGAGCGAGCCCCGGCTGCCTTTATCTGCAAGGCCGACGCAGCTTCTCTGTGCATCGCCTGCGACGCTGATATTCACTCCGCGAATCCCCTGGCTAGCCGCCATCACCGTGTCCCAATTTTACCCATCTCCGGTACCGTCCACACCCCTCGGTCGTCCAATGTCGCAGGTCTAGTCGGGGATACTGAAGACGGTGGATATCCTGGTCAAGAAGAAAACGAGCCAATTGACGAAGAAGACGAAGAAGAGGCAGCATCATGGCTGCTATTGAACCCCGTGAAGACCAGTTCGAGCCCTAACAACATCATCAACAACAACGATCAAAGGACCACCGGATTTCTGTTCGCTGGCGAAGACGACGAGTATTTGGATCTGGTCGAGTTCAATTCGTGCGGAGGAAATCAATTTGCCGAAGAACAGTACGACATTCCACAGCAACAATACAACAGTGCGGCGCAGAAGAATTACGGAGGAGATAGCGTTGTTCCAGTTCAGAATGAAATCAAGGAGAAGCTCCATCATCAGAATCAAAATTATCAGCTGGGCTTTGAATATGATGCCTCTAAATCAGGATTCGATTTCAATGGCTTCGTTAATCACAGCGTTTCGATCTCATCGATGGACGTAGGAGTGGTGCCAGAAACAACAGCGAGCGATATCTCAATCTCTCACACAAGGCCTCCAAAGGGGACAATCGACCTTTTCTCCAGTCCTCCCGTTCAAATCGCGACCCAACTTTCTCCGGTGGACAGAGAGGCTAGGGTTCTGAGATACAGAGAGAAGAAGAAGACCAGAAAATTCGAGAAGACAATTCGATATGCGTCGAGAAAGGCGTACGCAGAGACTCGACCCCGCATCAAGGGTCGGTTTGCGAAGAGAACAGACTTGGAAATCGAAGTTGATCAGAAATTATCGATGTCGTTCATGGTAGTACCTGGATACGGCGTCGTTCAATCGTTCTAA 1188 50.93 MLKTEVNATNGDEDGDGGTTGGCNSWGRVCDTCRSAACTVYCRADSAFLCSDCDARIHAANRVASRHERVFVCEACERAPAAFICKADAASLCIACDADIHSANPLASRHHRVPILPISGTVHTPRSSNVAGLVGDTEDGGYPGQEENEPIDEEDEEEAASWLLLNPVKTSSSPNNIINNNDQRTTGFLFAGEDDEYLDLVEFNSCGGNQFAEEQYDIPQQQYNSAAQKNYGGDSVVPVQNEIKEKLHHQNQNYQLGFEYDASKSGFDFNGFVNHSVSISSMDVGVVPETTASDISISHTRPPKGTIDLFSSPPVQIATQLSPVDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDLEIEVDQKLSMSFMVVPGYGVVQSF 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7118414 7252663 - Bma014943.1 Bma02g00460 77710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00460 395 Pfam CCT motif 326 368 IPR010402 GO:0005515
Bma02g00460 395 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 25 395 - -
Bma02g00460 395 Pfam B-box zinc finger 71 115 IPR000315 GO:0008270
Bma02g00460 395 ProSiteProfiles Zinc finger B-box type profile. 25 72 IPR000315 GO:0008270
Bma02g00460 395 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 25 395 IPR045281 GO:0009909
Bma02g00460 395 CDD Bbox1_BBX-like 29 72 - -
Bma02g00460 395 SMART bboxneu5 73 115 IPR000315 GO:0008270
Bma02g00460 395 SMART bboxneu5 25 72 IPR000315 GO:0008270
Bma02g00460 395 ProSiteProfiles Zinc finger B-box type profile. 68 115 IPR000315 GO:0008270
Bma02g00460 395 CDD Bbox1_BBX-like 72 115 - -
Bma02g00460 395 ProSiteProfiles CCT domain profile. 326 368 IPR010402 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00460 Bma-Chr2:7118414 Bma06g00932 Bma-Chr6:45146901 1.77E-70 dispersed
Bma15g00012 Bma-Chr15:172318 Bma02g00460 Bma-Chr2:7118414 9.86E-08 dispersed
Bma15g00088 Bma-Chr15:999469 Bma02g00460 Bma-Chr2:7118414 1.40E-07 dispersed
Bma02g00460 Bma-Chr2:7118414 Bma06g00924 Bma-Chr6:44829716 1.77E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56873 PF00643 zf-B_box 5.00E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00460 - - qlo:115975874 507.294