Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00460 ATGTTGAAAACTGAAGTCAATGCTACCAATGGCGACGAAGACGGCGACGGTGGAACTACCGGAGGCTGTAATAGTTGGGGACGAGTCTGCGATACTTGTCGGTCGGCCGCGTGTACAGTCTACTGCAGAGCTGATTCAGCGTTCCTATGCTCCGATTGCGACGCTCGAATCCACGCGGCTAACCGCGTTGCCTCTCGCCACGAGCGAGTCTTTGTATGTGAGGCGTGCGAGCGAGCCCCGGCTGCCTTTATCTGCAAGGCCGACGCAGCTTCTCTGTGCATCGCCTGCGACGCTGATATTCACTCCGCGAATCCCCTGGCTAGCCGCCATCACCGTGTCCCAATTTTACCCATCTCCGGTACCGTCCACACCCCTCGGTCGTCCAATGTCGCAGGTCTAGTCGGGGATACTGAAGACGGTGGATATCCTGGTCAAGAAGAAAACGAGCCAATTGACGAAGAAGACGAAGAAGAGGCAGCATCATGGCTGCTATTGAACCCCGTGAAGACCAGTTCGAGCCCTAACAACATCATCAACAACAACGATCAAAGGACCACCGGATTTCTGTTCGCTGGCGAAGACGACGAGTATTTGGATCTGGTCGAGTTCAATTCGTGCGGAGGAAATCAATTTGCCGAAGAACAGTACGACATTCCACAGCAACAATACAACAGTGCGGCGCAGAAGAATTACGGAGGAGATAGCGTTGTTCCAGTTCAGAATGAAATCAAGGAGAAGCTCCATCATCAGAATCAAAATTATCAGCTGGGCTTTGAATATGATGCCTCTAAATCAGGATTCGATTTCAATGGCTTCGTTAATCACAGCGTTTCGATCTCATCGATGGACGTAGGAGTGGTGCCAGAAACAACAGCGAGCGATATCTCAATCTCTCACACAAGGCCTCCAAAGGGGACAATCGACCTTTTCTCCAGTCCTCCCGTTCAAATCGCGACCCAACTTTCTCCGGTGGACAGAGAGGCTAGGGTTCTGAGATACAGAGAGAAGAAGAAGACCAGAAAATTCGAGAAGACAATTCGATATGCGTCGAGAAAGGCGTACGCAGAGACTCGACCCCGCATCAAGGGTCGGTTTGCGAAGAGAACAGACTTGGAAATCGAAGTTGATCAGAAATTATCGATGTCGTTCATGGTAGTACCTGGATACGGCGTCGTTCAATCGTTCTAA 1188 50.93 MLKTEVNATNGDEDGDGGTTGGCNSWGRVCDTCRSAACTVYCRADSAFLCSDCDARIHAANRVASRHERVFVCEACERAPAAFICKADAASLCIACDADIHSANPLASRHHRVPILPISGTVHTPRSSNVAGLVGDTEDGGYPGQEENEPIDEEDEEEAASWLLLNPVKTSSSPNNIINNNDQRTTGFLFAGEDDEYLDLVEFNSCGGNQFAEEQYDIPQQQYNSAAQKNYGGDSVVPVQNEIKEKLHHQNQNYQLGFEYDASKSGFDFNGFVNHSVSISSMDVGVVPETTASDISISHTRPPKGTIDLFSSPPVQIATQLSPVDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDLEIEVDQKLSMSFMVVPGYGVVQSF 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7118414 7252663 - Bma014943.1 Bma02g00460 77710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00460 395 Pfam CCT motif 326 368 IPR010402 GO:0005515
Bma02g00460 395 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 25 395 - -
Bma02g00460 395 Pfam B-box zinc finger 71 115 IPR000315 GO:0008270
Bma02g00460 395 ProSiteProfiles Zinc finger B-box type profile. 25 72 IPR000315 GO:0008270
Bma02g00460 395 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 25 395 IPR045281 GO:0009909
Bma02g00460 395 CDD Bbox1_BBX-like 29 72 - -
Bma02g00460 395 SMART bboxneu5 73 115 IPR000315 GO:0008270
Bma02g00460 395 SMART bboxneu5 25 72 IPR000315 GO:0008270
Bma02g00460 395 ProSiteProfiles Zinc finger B-box type profile. 68 115 IPR000315 GO:0008270
Bma02g00460 395 CDD Bbox1_BBX-like 72 115 - -
Bma02g00460 395 ProSiteProfiles CCT domain profile. 326 368 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00460 - - - qlo:115975874 507.294
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00460 Bma-Chr2:7118414 Bma06g00932 Bma-Chr6:45146901 1.77E-70 dispersed
Bma15g00012 Bma-Chr15:172318 Bma02g00460 Bma-Chr2:7118414 9.86E-08 dispersed
Bma15g00088 Bma-Chr15:999469 Bma02g00460 Bma-Chr2:7118414 1.40E-07 dispersed
Bma02g00460 Bma-Chr2:7118414 Bma06g00924 Bma-Chr6:44829716 1.77E-70 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00460 . 24 395 C2C2-CO-like Transcription Factor Family AT5G15850 52.3 2.0e-59 226.5
Bma02g00460 . 12 395 C2C2-CO-like Transcription Factor Family AT3G02380 53.2 7.5e-67 251.1
Bma01g01259 . 1 316 C2C2-CO-like Transcription Factor Family AT5G24930 52.7 1.1e-60 230.7
Bma06g00924 BCT 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma06g00932 . 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 4.6e-78 288.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.3e-77 287.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00543 . 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 57.5 2.4e-54 209.5
Bma15g00960 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 6.9e-53 203.8
Bma06g00103 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT2G21320 59.6 1.2e-49 193.0
Bma15g00960 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 61.6 4.6e-55 211.1
Bma06g00103 CCT,ECH 1 109 C2C2-CO-like Transcription Factor Family AT4G38960 80.7 2.2e-49 192.2
Bma12g00543 . 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 1.2e-55 213.4
Bma05g00152 BCT 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 6.1e-47 184.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009273 0 1 0 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56873 PF00643 zf-B_box 5.00E-06 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00460 Bma_Chr02 FPKM 6.725136 6.386829 10.017858 9.803016 18.973806 16.097944 17.297258 9.228204 9.990219 9.883323