Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00477 ATGCGGATGAGCTGCAATGGTTGCAGGGTGCTGCGCAAAGGATGTAGTGAAAATTGCAGCATTAGACCTTGTTTGCAGTGGATCAAGAGCCACGACTCTCAAGCGAACGCTACAGTCTTCCTCGCTAAGTTTTATGGCCGTGCCGGCCTTATGAATCTAATCAACGCCGGCCCTGAACATCTCCGACCTGCCATTTTTAGGTCTTTGCTGTACGAAGCTTGCGGGAGGATTGTTAATCCATTTTATGGATCCGTCGGGTTGCTGTGGTCTGGGAGCTGGGAACTCTGCCAAGCTGCCGTCGAAGCAGTGCTGAAAGGAGCTCCGATTACTCCGATTACTTCAGAAGCTGCGGCGAACGGTCATGGACTGCCGCTTAATCCCCACGATATCCGGCATGTGTCGAAGGATGTGAACTCCACCGCGTCAGATCGTCTCCGGCGAGGGAAGACTCGCTGCCGGTTGCATCGCTCCGTCAGAAAGCCGAAGCCGAGTAAAGATTCTCGGAAAGGTTCCGTCGTCGATCGAGTGGGCGATTTCTTCCCCGACCAGATAATCAGGTCGACGAGTCACGAGTCGTCACTGAGTCACCAGTCCGACTCCGCCCCTAACGTGGAGAACGAGAGCAAGGAATCGGAGTGCATCGTCTCCGTTGAGACAGCCGATGCTTCGGCCCCGGCAATGATCCGATCAGAAACAGATTCCTTTCCTAAGCGGAAGTACGAAGCAATCGAGGAAGGAGACGTAGCCCTGGAGCTTACATTAGGGTTGAAACCTCCGATGTCATGCGCCACGCACGTGGTTCCTATGAAGAAGCGAAGAGTCGACCACTCCCCAACCGGCGCGTGTAAGACAGAGCTGGGCCTTGACTTGCAGGTTTACAAACAAAGCCCACGTTAA 897 54.18 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSHDSQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPFYGSVGLLWSGSWELCQAAVEAVLKGAPITPITSEAAANGHGLPLNPHDIRHVSKDVNSTASDRLRRGKTRCRLHRSVRKPKPSKDSRKGSVVDRVGDFFPDQIIRSTSHESSLSHQSDSAPNVENESKESECIVSVETADASAPAMIRSETDSFPKRKYEAIEEGDVALELTLGLKPPMSCATHVVPMKKRRVDHSPTGACKTELGLDLQVYKQSPR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7683650 7684636 - Bma014966.1 Bma02g00477 77727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00477 298 MobiDBLite consensus disorder prediction 187 202 - -
Bma02g00477 298 MobiDBLite consensus disorder prediction 187 213 - -
Bma02g00477 298 PIRSF AS2 1 296 IPR017414 -
Bma02g00477 298 MobiDBLite consensus disorder prediction 136 173 - -
Bma02g00477 298 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Bma02g00477 298 MobiDBLite consensus disorder prediction 148 163 - -
Bma02g00477 298 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Bma02g00477 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 289 - -
Bma02g00477 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00477 Bma-Chr2:7683650 Bma15g01117 Bma-Chr15:44210380 6.07E-51 dispersed
Bma01g01122 Bma-Chr1:11853301 Bma02g00477 Bma-Chr2:7683650 9.65E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56876 PF03195 LOB 4.40E-23 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00477 - - fve:101314484 376.711