Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g00477 | ATGCGGATGAGCTGCAATGGTTGCAGGGTGCTGCGCAAAGGATGTAGTGAAAATTGCAGCATTAGACCTTGTTTGCAGTGGATCAAGAGCCACGACTCTCAAGCGAACGCTACAGTCTTCCTCGCTAAGTTTTATGGCCGTGCCGGCCTTATGAATCTAATCAACGCCGGCCCTGAACATCTCCGACCTGCCATTTTTAGGTCTTTGCTGTACGAAGCTTGCGGGAGGATTGTTAATCCATTTTATGGATCCGTCGGGTTGCTGTGGTCTGGGAGCTGGGAACTCTGCCAAGCTGCCGTCGAAGCAGTGCTGAAAGGAGCTCCGATTACTCCGATTACTTCAGAAGCTGCGGCGAACGGTCATGGACTGCCGCTTAATCCCCACGATATCCGGCATGTGTCGAAGGATGTGAACTCCACCGCGTCAGATCGTCTCCGGCGAGGGAAGACTCGCTGCCGGTTGCATCGCTCCGTCAGAAAGCCGAAGCCGAGTAAAGATTCTCGGAAAGGTTCCGTCGTCGATCGAGTGGGCGATTTCTTCCCCGACCAGATAATCAGGTCGACGAGTCACGAGTCGTCACTGAGTCACCAGTCCGACTCCGCCCCTAACGTGGAGAACGAGAGCAAGGAATCGGAGTGCATCGTCTCCGTTGAGACAGCCGATGCTTCGGCCCCGGCAATGATCCGATCAGAAACAGATTCCTTTCCTAAGCGGAAGTACGAAGCAATCGAGGAAGGAGACGTAGCCCTGGAGCTTACATTAGGGTTGAAACCTCCGATGTCATGCGCCACGCACGTGGTTCCTATGAAGAAGCGAAGAGTCGACCACTCCCCAACCGGCGCGTGTAAGACAGAGCTGGGCCTTGACTTGCAGGTTTACAAACAAAGCCCACGTTAA | 897 | 54.18 | MRMSCNGCRVLRKGCSENCSIRPCLQWIKSHDSQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPFYGSVGLLWSGSWELCQAAVEAVLKGAPITPITSEAAANGHGLPLNPHDIRHVSKDVNSTASDRLRRGKTRCRLHRSVRKPKPSKDSRKGSVVDRVGDFFPDQIIRSTSHESSLSHQSDSAPNVENESKESECIVSVETADASAPAMIRSETDSFPKRKYEAIEEGDVALELTLGLKPPMSCATHVVPMKKRRVDHSPTGACKTELGLDLQVYKQSPR | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7683650 | 7684636 | - | Bma014966.1 | Bma02g00477 | 77727 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g00477 | 298 | MobiDBLite | consensus disorder prediction | 187 | 202 | - | - | |
Bma02g00477 | 298 | MobiDBLite | consensus disorder prediction | 187 | 213 | - | - | |
Bma02g00477 | 298 | PIRSF | AS2 | 1 | 296 | IPR017414 | - | |
Bma02g00477 | 298 | MobiDBLite | consensus disorder prediction | 136 | 173 | - | - | |
Bma02g00477 | 298 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Bma02g00477 | 298 | MobiDBLite | consensus disorder prediction | 148 | 163 | - | - | |
Bma02g00477 | 298 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 103 | IPR004883 | - | |
Bma02g00477 | 298 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 1 | 289 | - | - | |
Bma02g00477 | 298 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 289 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g00477 | Bma-Chr2:7683650 | Bma15g01117 | Bma-Chr15:44210380 | 6.07E-51 | dispersed | |
Bma01g01122 | Bma-Chr1:11853301 | Bma02g00477 | Bma-Chr2:7683650 | 9.65E-166 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56876 | PF03195 | LOB | 4.40E-23 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g00477 | - | - | fve:101314484 | 376.711 |