Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma02g00511 | ATGGAGCAGTTGTTGGGTCTTCTTAAAATTCATGTTTGCAGAGGGGTTAACCTTGCAGTGAGAGATGTAACGACCAGCGACCCTTATGTTGTTCTCAAAATGGGAAAACAGAAACTGAAAACTCGTGTAGTTAGGAAAAACATCAATCCAGAGTGGAACGAAGATTTAACTATGTCTGTTATGGATCCTTCTCTTCCGATTAAACTTACCTTTGATTTCATTTTGTTACAGTCTGTGTATGACAAAGATACATTTTCACTCGACGACAAAATGGGAGATGCCGAGTTCGAAATCGGGCCGTTCCTCGAAGCCATGAGAATGCGGTTGGATAACCTCCCGAGCGGAACGATTATAAGAAAGATTCAACCGAGCAGGCAAAATTGCTTGTCTGAAGAGAGTAGCATTGTTTGGGAAGGAGAGAAAGTTGCCCAAAACTTGTTTCTCAGATTGAGAAACGTGGAATCTGGTGAAGTTCAATTGAAGTTGCAGTGGGTGGACATTCCTGGCTCGAGAGGCTTATGA | 522 | 42.53 | MEQLLGLLKIHVCRGVNLAVRDVTTSDPYVVLKMGKQKLKTRVVRKNINPEWNEDLTMSVMDPSLPIKLTFDFILLQSVYDKDTFSLDDKMGDAEFEIGPFLEAMRMRLDNLPSGTIIRKIQPSRQNCLSEESSIVWEGEKVAQNLFLRLRNVESGEVQLKLQWVDIPGSRGL | 173 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 10166749 | 10167848 | - | Bma015011.1 | Bma02g00511 | 77761 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma02g00511 | 173 | Pfam | C2 domain | 7 | 102 | IPR000008 | - | |
| Bma02g00511 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 171 | IPR044562 | - | |
| Bma02g00511 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE | 1 | 171 | - | - | |
| Bma02g00511 | 173 | SMART | C2_3c | 7 | 110 | IPR000008 | - | |
| Bma02g00511 | 173 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 121 | IPR035892 | - | |
| Bma02g00511 | 173 | CDD | C2_ArfGAP | 5 | 156 | - | - | |
| Bma02g00511 | 173 | ProSiteProfiles | C2 domain profile. | 1 | 114 | IPR000008 | - | |
| Bma02g00511 | 173 | Gene3D | C2 domain | 4 | 168 | IPR035892 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma01g00463 | Bma-Chr1:3836620 | Bma02g00511 | Bma-Chr2:10166749 | 3.77E-69 | dispersed | |
| Bma02g00511 | Bma-Chr2:10166749 | Bma03g00910 | Bma-Chr3:9076041 | 4.46E-82 | dispersed | |
| Bma03g00131 | Bma-Chr3:1006520 | Bma02g00511 | Bma-Chr2:10166749 | 1.53E-08 | transposed | |
| Bma01g01143 | Bma-Chr1:12393069 | Bma02g00511 | Bma-Chr2:10166749 | 5.35E-97 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma02g00511 | - | - | tcc:18601882 | 271.166 |