Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00533 ATGGCTGCCCCGTCTTTGGATTCTTCCATGCTTGAACAGTTTCAGCAGTTCCTTGCCTTACAACCTCATGCTATGTCTATTGCCCCTCATAAAGGTTTATCCTCGTATGATTCCTCAGCACCCGAAGGATCTCAATTTGATACTTGTCAATACGATACTAAAATGAACGAAATACTTGGTGGGGAAGGAGAGGATTTTTTCACAACGTATGATGAGGTCTGTGAAAGTTTTGATGCCATGGGTTTGCAGAAATACCTCTTGATGGGCATATATGCATATGGTTTTGAAAAGCCTTCTGCTATCCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACTTGATGTAGTTCAACAAGCACAATCTGGAACTGGGAAAACAGCCACTTTCTGCTGTGGAATTTTGCAGCAATTGGATTATGGACTAGTTGAATGCCAGTCATTAGTCCTTGCACCCATCCGAGAACTGGCGCAACAGATTGAGATGGTTATGTGTGAATTGGGTGAGTATCTTGGTGTCAAGGTCCACACATGTGTTGGTGGTACAAGTGTTCGTGAAGATCAGCGTATTCTTTCTAGTGGGGTTCATGTTGTTGTTGGTACACCTGGTCATGTGTTTGACATGTTGAGGAGACAATCCCTTCGCCCTGATCATATAAAAATGTTTGTATTAGTCGAAGCAGATGAGATGCTTTCACGAGGTTTCAAGGATCAGATCTATGATATTTTCTGGTTGCTGCCGCCAGAAATTCAGGTCGGGGTTTCCTCTGCTACTATGCCACCTGAGGCTCTTGAGATCACAAGGAAGTTCATGAATAAACCTGTTCGTATTCTGGTAAAACGAGATGAGCACACCCTTGAGGGTATTAAGCAATTCCATGTCAATGTTGAGAAGGAGGAATGGAAGCTTGACACTCTTTGTGACCTTTATGAGACTTTGGCAATTACACAAAGTGTCATTTTTGTTAATACCAGGAGCAAGGTTGATTGGCTGACAGACAAGATGCGCAGTCGTGATCACACTGTCTCTTCCACCCATGGAGACATGGACCAAAATACCAGAGACATTATTATGCGGGAGTTCCGATCTGGTTCATCCCGTGTCCTCATTACTACTGATCTCTTGACCATAGGTATTGATGTCCAACAAGTATCCCTTGTGTTACACTATGATCTTCCGACTCAACCAGAGAACTACCTTCATCGAATTGGCCGTAGTGGACGATTTGGGAGGAAGGGGGTGGCCATAAATTTTGTGACATCAGATGATGACAGGATGTTGGTGGACATTCAGAAGTTCTGTAATGTCGTAACTGAGGAGTTGCCAGCAAACGTAGCCGATCTCCTTTGA 1347 43.95 MAAPSLDSSMLEQFQQFLALQPHAMSIAPHKGLSSYDSSAPEGSQFDTCQYDTKMNEILGGEGEDFFTTYDEVCESFDAMGLQKYLLMGIYAYGFEKPSAIQQRGIVPFCKGLDVVQQAQSGTGKTATFCCGILQQLDYGLVECQSLVLAPIRELAQQIEMVMCELGEYLGVKVHTCVGGTSVREDQRILSSGVHVVVGTPGHVFDMLRRQSLRPDHIKMFVLVEADEMLSRGFKDQIYDIFWLLPPEIQVGVSSATMPPEALEITRKFMNKPVRILVKRDEHTLEGIKQFHVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRSKVDWLTDKMRSRDHTVSSTHGDMDQNTRDIIMREFRSGSSRVLITTDLLTIGIDVQQVSLVLHYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLVDIQKFCNVVTEELPANVADLL 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10491014 10496563 - Bma015036.1 Bma02g00533 77783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00533 448 Pfam DEAD/DEAH box helicase 100 261 IPR011545 GO:0003676|GO:0005524
Bma02g00533 448 SMART ultradead3 94 291 IPR014001 -
Bma02g00533 448 PANTHER EUKARYOTIC INITIATION FACTOR 4A 58 448 - -
Bma02g00533 448 Gene3D - 284 448 IPR027417 -
Bma02g00533 448 CDD DEADc_EIF4A 79 277 - -
Bma02g00533 448 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 75 103 IPR014014 GO:0003724
Bma02g00533 448 Gene3D - 65 283 IPR027417 -
Bma02g00533 448 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 276 IPR014001 -
Bma02g00533 448 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 287 448 IPR001650 -
Bma02g00533 448 PANTHER RNA HELICASE 58 448 - -
Bma02g00533 448 Pfam Helicase conserved C-terminal domain 301 409 IPR001650 -
Bma02g00533 448 SMART helicmild6 328 409 IPR001650 -
Bma02g00533 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 429 IPR027417 -
Bma02g00533 448 CDD SF2_C_DEAD 288 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00533 Bma-Chr2:10491014 Bma15g00330 Bma-Chr15:3207888 0 dispersed
Bma02g00348 Bma-Chr2:5613205 Bma02g00533 Bma-Chr2:10491014 1.10E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00533 K03257 - jre:109008881 720.694