Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00538 ATGGATGGAGTCATTGGATCTGATTTTCCTTTCTACTCCACTCTTCGTCGCTTGATGGATTTGCCAGACGGGATCGAGAAGTCATCCAACAAGCACACTCGTAGCTACGTCCGCGACGCCAAGGCCATGGCTACTACTCCGGCTGACGTAAAGGAATATCCTGATTCCTACGTCTTCATCATCGACATGCCAGGACTGAAAACCGGGGATATCAAGGTTCAAGTGGAGGACGAGAATGTTCTTCTGATCAGTGGCGAGAGAAAGCGGGAGGAAGAGAAAGAGGATGCTAAGTTCCTCAGAGTGGAGAGGAGGATCGGCAAGCTCATGAGAAAGTTCGTCCTGCTGGAAGATTCAAACACCGACGCCGTGTCAGCGGTGTGTCAGGACGGCGTGCTCAGTGTGACGGTGGAGAAACTTCCTCTGCGAAAGCCGAAGAAGCCCAGAACAATACAAGTAGAGATTGCATAA 468 50.85 MDGVIGSDFPFYSTLRRLMDLPDGIEKSSNKHTRSYVRDAKAMATTPADVKEYPDSYVFIIDMPGLKTGDIKVQVEDENVLLISGERKREEEKEDAKFLRVERRIGKLMRKFVLLEDSNTDAVSAVCQDGVLSVTVEKLPLRKPKKPRTIQVEIA 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10570393 10570860 - Bma015043.1 Bma02g00538 77788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00538 155 Pfam Hsp20/alpha crystallin family 49 152 IPR002068 -
Bma02g00538 155 Gene3D - 10 154 IPR008978 -
Bma02g00538 155 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 39 153 IPR002068 -
Bma02g00538 155 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 154 - -
Bma02g00538 155 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 154 - -
Bma02g00538 155 SUPERFAMILY HSP20-like chaperones 11 147 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00538 K13993 HSP20; HSP20 family protein - tcc:18588112 210.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00538 Bma-Chr2:10570393 Bma04g00119 Bma-Chr4:956479 2.71E-57 dispersed
Bma02g00343 Bma-Chr2:5547897 Bma02g00538 Bma-Chr2:10570393 7.66E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g125 . . Bda01g00633 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00538 . Cmo01g01797 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00538 Bma_Chr02 FPKM 53.048283 60.821442 55.218159 57.706627 40.179562 50.688129 37.588478 77.306129 86.26442 81.169334