Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00541 ATGGAAAGCAAGCTCTACGAATCAGCAGTGGAAGGAAGTGTGGAAAAGCTTTTAGAATTGATCAGACAAGACCCGCTAATTCTTGATCGAGCAGCCATTAATGGCATCTCTGAGACTCCCCTGCACGTCGCCGCCATGGTTGGACACACGGAGTTTGCCAAGGAGATTTTGAGAAGAAGGCCTCAGCTTGCGAAGGAGCTTGATTCGACAAGATCTTCCCCTCTTCACCTAGCACGTGTAAAAGGGCATCTGGAAATAGTAAGATCGTTACTCCGAGTAGATTCCGATTTGTGTTTTGCTGTCGATGAAGATAGAAGAAACCCTCTTCGTCTGGCAGCCATGAATGGCCGGATTGGTGTTCTGCAAGAGCTGGTTCGAGGAAGACCCCTGGCTGCTCGAGCTGGAGCGGACCATGGCGGAACCATTTTGCATGCTTGCGTCAAGTACAATCAACTGGAGGCTCTGAAGATGCTGGTGGAGGCTATAAACGATGATTCATTTATTAACAAGAGAGATGATTTTGGCTTCACCGTTCTCCACTTAGCCGTCTCCTACAAACAAATTGAGGCTGTAAATTTTTTGCTGACAAGATCTGTAGAAGTGAATGCTTTAAGCTCAAATGGGTTCACTGCATTAGACATTCTATCTCAAAGTCCTCGAGACGTAAAAGATCTGGATATTGCCGAGAGTCTCCGATCTGCCGGAGCCTCCCGAGCCACGATTCCCACCTCCGCCGAAAACCGGAAAGGGATTCTGGAAAGGTAG 765 47.97 MESKLYESAVEGSVEKLLELIRQDPLILDRAAINGISETPLHVAAMVGHTEFAKEILRRRPQLAKELDSTRSSPLHLARVKGHLEIVRSLLRVDSDLCFAVDEDRRNPLRLAAMNGRIGVLQELVRGRPLAARAGADHGGTILHACVKYNQLEALKMLVEAINDDSFINKRDDFGFTVLHLAVSYKQIEAVNFLLTRSVEVNALSSNGFTALDILSQSPRDVKDLDIAESLRSAGASRATIPTSAENRKGILER 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10665532 10666371 - Bma015048.1 Bma02g00541 77791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00541 254 ProSiteProfiles Ankyrin repeat profile. 70 97 IPR002110 GO:0005515
Bma02g00541 254 Gene3D - 1 250 IPR036770 -
Bma02g00541 254 SMART ANK_2a 138 168 IPR002110 GO:0005515
Bma02g00541 254 SMART ANK_2a 70 99 IPR002110 GO:0005515
Bma02g00541 254 SMART ANK_2a 36 65 IPR002110 GO:0005515
Bma02g00541 254 SMART ANK_2a 207 240 IPR002110 GO:0005515
Bma02g00541 254 SMART ANK_2a 174 203 IPR002110 GO:0005515
Bma02g00541 254 SMART ANK_2a 104 133 IPR002110 GO:0005515
Bma02g00541 254 ProSiteProfiles Ankyrin repeat region circular profile. 174 203 - -
Bma02g00541 254 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 2 240 - -
Bma02g00541 254 SUPERFAMILY Ankyrin repeat 5 236 IPR036770 -
Bma02g00541 254 Pfam Ankyrin repeats (3 copies) 110 202 IPR002110 GO:0005515
Bma02g00541 254 Pfam Ankyrin repeats (3 copies) 13 94 IPR002110 GO:0005515
Bma02g00541 254 ProSiteProfiles Ankyrin repeat region circular profile. 70 97 - -
Bma02g00541 254 PANTHER HOMEOBOX PROTEIN WARIAI 2 240 - -
Bma02g00541 254 ProSiteProfiles Ankyrin repeat profile. 174 206 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00541 - - - fve:101313537 297.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00541 Bma-Chr2:10665532 Bma09g00950 Bma-Chr9:48869933 2.54E-11 dispersed
Bma07g00416 Bma-Chr7:5136761 Bma02g00541 Bma-Chr2:10665532 1.78E-08 dispersed
Bma02g00541 Bma-Chr2:10665532 Bma02g00544 Bma-Chr2:11053046 9.54E-167 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00541 Bma_Chr02 FPKM 3.21134 3.862683 18.36832 18.68948 43.171608 40.718227 42.33186 17.997576 17.953682 17.53606