Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00544 ATGGAAAGCAAGCTCTACGAATCATCAGTGGAAGGAAGTGTGGAAAAGCTTTTAGAATTGATCAGACAAGACCCGCTAATTCTTGATCGAGCCGCCATTAATGGCATCTCTGAAACTCCCCTGCACGTCGCCGCCATGGTTGGACACACTGAGTTTGCAAAGGAGATTTTGAGAAGAAGACCTCAGCTTGCGAAGGAGCTTGATTCGACTAGATCTTCCCCTCTTCACCTAGCATGTGGAAAAGGGCATCTGGAAATAGTAAGATCGTTACTCCGAGTAGATTCCGATATGTGTTTTGCTGTCGATGAAGATGGAAGAAACCCTCTTCGTCTTGCAGCCATGAATGGCCGGATTGGTGTTCTGCAAGAGCTGGTTCGAGCAAGACCCCAGGCTGCTCGAGCTGGTGTTGCGGACCATGGCGGAACCATTTTGCATGCTTGCGTGAAGAACAATCAACTGGAAGCTCTGAAGATGCTAGTGGAGGCTATAAACGATGATTCATTTATTAACAAGAGAGATGATTTTGGCTTCACCGTTCTCCACTTAGCCGTCTCCTACAAACAAATTGAGACTGTAAATTTTTTGCTGACGAGATCTGTAGAAGTGAATGCTTTAAGCTCAAATGGGTTCACTGCATTAGACATTCTGTCTCAAAGTCCTCGAGACCTAAAAGATCTGGATATTGCCGAGAGTCTCCGATCTGCCGGAGCCTCCCGAGCCACGGCCAAACCCATTCCCACCTCCGCCGGAAACCGGAAAAGGGATTCTGGAAAGGCAGTGGCATTAACCTACGACTACGAGTTGGTGAATCGTAAGCGTGAGAGGAAAGCAAGTTTGGCAAACAAGAAAAACGCAATAATGGTGGTCGCATCGTTGATAGCAACCATGGCTTTTTCGGCCGGACTGACCCCTCCCGGCGGTCTCTGGCAAGATAACTCCGCCACCGGCGACCCTAACAAACACATGGCTGGAAAATCGATAATGGCTTCTCAAGATACTGCCTCGGTATACGATTTATTTGTTTTATTCAACACGATCGGATTAGTAGCTTCATCAACCGTCATATTGCTGCTAATTACTGGGTTACCATTACACAGAGGATTTTTCATGTGGATTCTTAGAATAATCATGTGGGTGGCTATAACTTCGATGACTATTACTTATTTTTTTTCGCTGGCCAATTTCACACCACCTGATAAGTTGGATGTAGTGGTGGTTTCAGTGCATTCCATCGGGTTGCGGGCCTGTACTTGTGTAACGTGGTTTGTCTTCGTCGGACACGCCCTCTACCTGTTCATTGTACTGTTTAGAAAGTTGTTTCGCGCTCTGAGAAGAAAGAGACGACAAGGACAAGTCTTTCTTCCTCAATTATGA 1374 46.36 MESKLYESSVEGSVEKLLELIRQDPLILDRAAINGISETPLHVAAMVGHTEFAKEILRRRPQLAKELDSTRSSPLHLACGKGHLEIVRSLLRVDSDMCFAVDEDGRNPLRLAAMNGRIGVLQELVRARPQAARAGVADHGGTILHACVKNNQLEALKMLVEAINDDSFINKRDDFGFTVLHLAVSYKQIETVNFLLTRSVEVNALSSNGFTALDILSQSPRDLKDLDIAESLRSAGASRATAKPIPTSAGNRKRDSGKAVALTYDYELVNRKRERKASLANKKNAIMVVASLIATMAFSAGLTPPGGLWQDNSATGDPNKHMAGKSIMASQDTASVYDLFVLFNTIGLVASSTVILLLITGLPLHRGFFMWILRIIMWVAITSMTITYFFSLANFTPPDKLDVVVVSVHSIGLRACTCVTWFVFVGHALYLFIVLFRKLFRALRRKRRQGQVFLPQL 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11053046 11054496 - Bma015058.1 Bma02g00544 77794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00544 457 ProSiteProfiles Ankyrin repeat profile. 175 207 IPR002110 GO:0005515
Bma02g00544 457 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE-RELATED 2 427 - -
Bma02g00544 457 PANTHER CASKIN 2 427 - -
Bma02g00544 457 SUPERFAMILY Ankyrin repeat 5 237 IPR036770 -
Bma02g00544 457 Gene3D - 7 254 IPR036770 -
Bma02g00544 457 ProSiteProfiles Ankyrin repeat region circular profile. 70 97 - -
Bma02g00544 457 SMART ANK_2a 70 99 IPR002110 GO:0005515
Bma02g00544 457 SMART ANK_2a 104 133 IPR002110 GO:0005515
Bma02g00544 457 SMART ANK_2a 175 204 IPR002110 GO:0005515
Bma02g00544 457 SMART ANK_2a 208 241 IPR002110 GO:0005515
Bma02g00544 457 SMART ANK_2a 36 65 IPR002110 GO:0005515
Bma02g00544 457 SMART ANK_2a 139 169 IPR002110 GO:0005515
Bma02g00544 457 Pfam Domain of unknown function 278 392 IPR026961 -
Bma02g00544 457 ProSiteProfiles Ankyrin repeat profile. 70 97 IPR002110 GO:0005515
Bma02g00544 457 Pfam Ankyrin repeats (3 copies) 31 92 IPR002110 GO:0005515
Bma02g00544 457 Pfam Ankyrin repeats (3 copies) 139 203 IPR002110 GO:0005515
Bma02g00544 457 ProSiteProfiles Ankyrin repeat region circular profile. 175 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00544 - - - vri:117912687 407.527
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00544 Bma-Chr2:11053046 Bma09g00950 Bma-Chr9:48869933 2.17E-12 dispersed
Bma02g00541 Bma-Chr2:10665532 Bma02g00544 Bma-Chr2:11053046 9.54E-167 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g137 . . . . . . . . . . . . . . Sed08g1788 . . Bhi04g01497 Tan02g1599 Cmetu03g0638 . Hepe08g1418 . Lcy13g2206 . . . . . . . . . . . . . . . . Blo18g00266 . . . . . Bma02g00544 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00846 . Chy03g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00544 Bma_Chr02 FPKM 46.859436 49.203609 43.695698 45.833557 74.099449 80.718399 73.953346 89.108475 92.008423 80.745201