Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g00545 | ATGGACGGGGCTGTTCCGTACAATCCTCGTACGGTCGAGGAGGTGTTTACGGATTTCAAGGGTCGTAGAGCTGGCATGCTTAAAGCCCTCACTACTGATGTCGAAAGCTTCTACCATCAGTGCGATCCCGAAAAAGAAAATCTGTGTCTTTATGGATATCCTAGTGGGCAATGGGAAGTCAATTTACCTGCCGAAGAGGTCCCTCCAGAGCTTCCCGAACCAGCATTAGGAATTAACTTTGCCAGAGATGGGATGGAAGAAAAAGATTGGTTATCCCTAGTTGCTGTTCATAGTGATATCTGGTTAAATGCTGTTGCCTTTTATTTTGGAGCTAGGTTCGGATTTGACAAAAATGATAGGAAACGCCTTTTTAATATGATCAATGAGTTTCCGACAATATTCGAGGTCGTGACAGGAACGGCCAAAAAACAAGCAAAAGATAAATCATCAGTTTCGAATCTCAGCAGTAACAAATCCAAAACTAGTGCAAAGCGGGGTTCTGAATCTCATGAAAAGCCAATGCAAATGAACGACGAGGATGAAGAGGGGTTGGAAGAGGAAGACAATGAAGAGCTTGGAGACACTCTTTGCGGTGCTTGTGGGGACAACTATGCATCAGATGAATTCTGGATTTGCTGTGACATCTGTGAGGTGTGGTTCCATGGGAAGTGCGTCAAAATCACCCCAGCAAAGGCAGAGCACATTAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGAGAGCTCGAGCTTGA | 753 | 44.75 | MDGAVPYNPRTVEEVFTDFKGRRAGMLKALTTDVESFYHQCDPEKENLCLYGYPSGQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDIWLNAVAFYFGARFGFDKNDRKRLFNMINEFPTIFEVVTGTAKKQAKDKSSVSNLSSNKSKTSAKRGSESHEKPMQMNDEDEEGLEEEDNEELGDTLCGACGDNYASDEFWICCDICEVWFHGKCVKITPAKAEHIKQYKCPSCSNKRARA | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 11058348 | 11060903 | - | Bma015059.1 | Bma02g00545 | 77795 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g00545 | 250 | SMART | PHD_3 | 196 | 244 | IPR001965 | - | |
Bma02g00545 | 250 | CDD | PHD_AL_plant | 196 | 246 | IPR044104 | - | |
Bma02g00545 | 250 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 245 | IPR013083 | - | |
Bma02g00545 | 250 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 4 | 249 | - | - | |
Bma02g00545 | 250 | Pfam | PHD-finger | 197 | 246 | IPR019787 | - | |
Bma02g00545 | 250 | ProSiteProfiles | Zinc finger PHD-type profile. | 194 | 246 | IPR019787 | - | |
Bma02g00545 | 250 | PANTHER | CPG BINDING PROTEIN | 4 | 249 | IPR045104 | GO:0006355|GO:0042393 | |
Bma02g00545 | 250 | MobiDBLite | consensus disorder prediction | 147 | 188 | - | - | |
Bma02g00545 | 250 | ProSitePatterns | Zinc finger PHD-type signature. | 197 | 243 | IPR019786 | - | |
Bma02g00545 | 250 | MobiDBLite | consensus disorder prediction | 163 | 177 | - | - | |
Bma02g00545 | 250 | SUPERFAMILY | FYVE/PHD zinc finger | 188 | 247 | IPR011011 | - | |
Bma02g00545 | 250 | MobiDBLite | consensus disorder prediction | 147 | 162 | - | - | |
Bma02g00545 | 250 | Pfam | Alfin | 11 | 139 | IPR021998 | GO:0006355|GO:0042393 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g02201 | Bma02g00545 | CCT | |
Bma01g02201 | Bma02g00545 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00252 | Bma-Chr1:2166370 | Bma02g00545 | Bma-Chr2:11058348 | 8.49E-117 | dispersed | |
Bma01g02201 | Bma-Chr1:78932295 | Bma02g00545 | Bma-Chr2:11058348 | 9.85E-98 | dispersed | |
Bma02g00545 | Bma-Chr2:11058348 | Bma08g01024 | Bma-Chr8:49360028 | 6.73E-97 | dispersed | |
Bma05g00910 | Bma-Chr5:47011904 | Bma02g00545 | Bma-Chr2:11058348 | 2.71E-71 | dispersed | |
Bma06g00479 | Bma-Chr6:22490114 | Bma02g00545 | Bma-Chr2:11058348 | 2.00E-21 | dispersed | |
Bma02g00545 | Bma-Chr2:11058348 | Bma06g00890 | Bma-Chr6:43804599 | 6.26E-118 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56883 | PF12165 | Alfin | 1.50E-67 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g00545 | - | - | vvi:100247536 | 430.254 |