Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00545 ATGGACGGGGCTGTTCCGTACAATCCTCGTACGGTCGAGGAGGTGTTTACGGATTTCAAGGGTCGTAGAGCTGGCATGCTTAAAGCCCTCACTACTGATGTCGAAAGCTTCTACCATCAGTGCGATCCCGAAAAAGAAAATCTGTGTCTTTATGGATATCCTAGTGGGCAATGGGAAGTCAATTTACCTGCCGAAGAGGTCCCTCCAGAGCTTCCCGAACCAGCATTAGGAATTAACTTTGCCAGAGATGGGATGGAAGAAAAAGATTGGTTATCCCTAGTTGCTGTTCATAGTGATATCTGGTTAAATGCTGTTGCCTTTTATTTTGGAGCTAGGTTCGGATTTGACAAAAATGATAGGAAACGCCTTTTTAATATGATCAATGAGTTTCCGACAATATTCGAGGTCGTGACAGGAACGGCCAAAAAACAAGCAAAAGATAAATCATCAGTTTCGAATCTCAGCAGTAACAAATCCAAAACTAGTGCAAAGCGGGGTTCTGAATCTCATGAAAAGCCAATGCAAATGAACGACGAGGATGAAGAGGGGTTGGAAGAGGAAGACAATGAAGAGCTTGGAGACACTCTTTGCGGTGCTTGTGGGGACAACTATGCATCAGATGAATTCTGGATTTGCTGTGACATCTGTGAGGTGTGGTTCCATGGGAAGTGCGTCAAAATCACCCCAGCAAAGGCAGAGCACATTAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGAGAGCTCGAGCTTGA 753 44.75 MDGAVPYNPRTVEEVFTDFKGRRAGMLKALTTDVESFYHQCDPEKENLCLYGYPSGQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDIWLNAVAFYFGARFGFDKNDRKRLFNMINEFPTIFEVVTGTAKKQAKDKSSVSNLSSNKSKTSAKRGSESHEKPMQMNDEDEEGLEEEDNEELGDTLCGACGDNYASDEFWICCDICEVWFHGKCVKITPAKAEHIKQYKCPSCSNKRARA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11058348 11060903 - Bma015059.1 Bma02g00545 77795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00545 250 SMART PHD_3 196 244 IPR001965 -
Bma02g00545 250 CDD PHD_AL_plant 196 246 IPR044104 -
Bma02g00545 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Bma02g00545 250 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 249 - -
Bma02g00545 250 Pfam PHD-finger 197 246 IPR019787 -
Bma02g00545 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Bma02g00545 250 PANTHER CPG BINDING PROTEIN 4 249 IPR045104 GO:0006355|GO:0042393
Bma02g00545 250 MobiDBLite consensus disorder prediction 147 188 - -
Bma02g00545 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Bma02g00545 250 MobiDBLite consensus disorder prediction 163 177 - -
Bma02g00545 250 SUPERFAMILY FYVE/PHD zinc finger 188 247 IPR011011 -
Bma02g00545 250 MobiDBLite consensus disorder prediction 147 162 - -
Bma02g00545 250 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02201 Bma02g00545 CCT
Bma01g02201 Bma02g00545 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00252 Bma-Chr1:2166370 Bma02g00545 Bma-Chr2:11058348 8.49E-117 dispersed
Bma01g02201 Bma-Chr1:78932295 Bma02g00545 Bma-Chr2:11058348 9.85E-98 dispersed
Bma02g00545 Bma-Chr2:11058348 Bma08g01024 Bma-Chr8:49360028 6.73E-97 dispersed
Bma05g00910 Bma-Chr5:47011904 Bma02g00545 Bma-Chr2:11058348 2.71E-71 dispersed
Bma06g00479 Bma-Chr6:22490114 Bma02g00545 Bma-Chr2:11058348 2.00E-21 dispersed
Bma02g00545 Bma-Chr2:11058348 Bma06g00890 Bma-Chr6:43804599 6.26E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56883 PF12165 Alfin 1.50E-67 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00545 - - vvi:100247536 430.254