Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00545 ATGGACGGGGCTGTTCCGTACAATCCTCGTACGGTCGAGGAGGTGTTTACGGATTTCAAGGGTCGTAGAGCTGGCATGCTTAAAGCCCTCACTACTGATGTCGAAAGCTTCTACCATCAGTGCGATCCCGAAAAAGAAAATCTGTGTCTTTATGGATATCCTAGTGGGCAATGGGAAGTCAATTTACCTGCCGAAGAGGTCCCTCCAGAGCTTCCCGAACCAGCATTAGGAATTAACTTTGCCAGAGATGGGATGGAAGAAAAAGATTGGTTATCCCTAGTTGCTGTTCATAGTGATATCTGGTTAAATGCTGTTGCCTTTTATTTTGGAGCTAGGTTCGGATTTGACAAAAATGATAGGAAACGCCTTTTTAATATGATCAATGAGTTTCCGACAATATTCGAGGTCGTGACAGGAACGGCCAAAAAACAAGCAAAAGATAAATCATCAGTTTCGAATCTCAGCAGTAACAAATCCAAAACTAGTGCAAAGCGGGGTTCTGAATCTCATGAAAAGCCAATGCAAATGAACGACGAGGATGAAGAGGGGTTGGAAGAGGAAGACAATGAAGAGCTTGGAGACACTCTTTGCGGTGCTTGTGGGGACAACTATGCATCAGATGAATTCTGGATTTGCTGTGACATCTGTGAGGTGTGGTTCCATGGGAAGTGCGTCAAAATCACCCCAGCAAAGGCAGAGCACATTAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGAGAGCTCGAGCTTGA 753 44.75 MDGAVPYNPRTVEEVFTDFKGRRAGMLKALTTDVESFYHQCDPEKENLCLYGYPSGQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDIWLNAVAFYFGARFGFDKNDRKRLFNMINEFPTIFEVVTGTAKKQAKDKSSVSNLSSNKSKTSAKRGSESHEKPMQMNDEDEEGLEEEDNEELGDTLCGACGDNYASDEFWICCDICEVWFHGKCVKITPAKAEHIKQYKCPSCSNKRARA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11058348 11060903 - Bma015059.1 Bma02g00545 77795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00545 250 SMART PHD_3 196 244 IPR001965 -
Bma02g00545 250 CDD PHD_AL_plant 196 246 IPR044104 -
Bma02g00545 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Bma02g00545 250 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 249 - -
Bma02g00545 250 Pfam PHD-finger 197 246 IPR019787 -
Bma02g00545 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Bma02g00545 250 PANTHER CPG BINDING PROTEIN 4 249 IPR045104 GO:0006355|GO:0042393
Bma02g00545 250 MobiDBLite consensus disorder prediction 147 188 - -
Bma02g00545 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Bma02g00545 250 MobiDBLite consensus disorder prediction 163 177 - -
Bma02g00545 250 SUPERFAMILY FYVE/PHD zinc finger 188 247 IPR011011 -
Bma02g00545 250 MobiDBLite consensus disorder prediction 147 162 - -
Bma02g00545 250 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00545 - - - vvi:100247536 430.254
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02201 Bma02g00545 CCT
Bma01g02201 Bma02g00545 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00252 Bma-Chr1:2166370 Bma02g00545 Bma-Chr2:11058348 8.49E-117 dispersed
Bma01g02201 Bma-Chr1:78932295 Bma02g00545 Bma-Chr2:11058348 9.85E-98 dispersed
Bma02g00545 Bma-Chr2:11058348 Bma08g01024 Bma-Chr8:49360028 6.73E-97 dispersed
Bma05g00910 Bma-Chr5:47011904 Bma02g00545 Bma-Chr2:11058348 2.71E-71 dispersed
Bma06g00479 Bma-Chr6:22490114 Bma02g00545 Bma-Chr2:11058348 2.00E-21 dispersed
Bma02g00545 Bma-Chr2:11058348 Bma06g00890 Bma-Chr6:43804599 6.26E-118 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g139 Blo01g01452 Blo12g01023 . . . Bpe02g00502 . Bma01g02201 Cmo05g00430 Cmo12g00597 . Cma05g00416 . Car12g00605 Sed08g1791 Cpe07g00574 . Bhi04g01504 Tan02g1591 Cmetu03g1113 . Hepe08g1423 . Lcy13g2215 . . . . . . . . . . . . . . . Blo17g00276 . . Bda13g01589 Bpe14g00276 . . Bma02g00545 . . . . Cma12g00657 . Car05g00354 Cpe11g00358 . . . . . . . . Cla08g00996 Cam08g1443 Cec08g1020 Cco08g1144 . . Cre08g0932 Lsi08g00842 . Chy03g00663 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00038 . 1 236 Alfin-like Transcription Factor Family AT1G14510 83.9 3.4e-101 364.8
Bma02g00545 CCT,ECH 1 247 Alfin-like Transcription Factor Family AT1G14510 68.3 2.1e-95 345.5
Bma01g00252 CCT 1 220 Alfin-like Transcription Factor Family AT1G14510 69.8 7.9e-90 327.0
Bma06g00890 . 1 250 Alfin-like Transcription Factor Family AT1G14510 68.4 6.9e-86 313.9
Bma08g01024 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.0 1.6e-79 292.7
Bma01g02201 CCT,ECH 1 237 Alfin-like Transcription Factor Family AT1G14510 56.0 2.2e-76 282.3
Bma01g01743 . 7 236 Alfin-like Transcription Factor Family AT1G14510 57.1 7.1e-75 277.3
Bma05g00910 . 1 166 Alfin-like Transcription Factor Family AT1G14510 78.9 2.0e-64 242.7
Bma04g00716 . 4 221 Alfin-like Transcription Factor Family AT1G14510 56.6 1.5e-61 233.0
Bma01g01801 . 1 201 Alfin-like Transcription Factor Family AT1G14510 57.5 5.0e-60 228.0
Bma02g00545 CCT,ECH 1 250 Alfin-like Transcription Factor Family AT5G26210 71.0 2.5e-104 375.2
Bma06g00890 . 1 252 Alfin-like Transcription Factor Family AT5G26210 79.5 1.0e-100 363.2
Bma01g00252 CCT 1 222 Alfin-like Transcription Factor Family AT5G26210 73.6 2.0e-96 349.0
Bma01g02201 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT5G26210 61.8 2.0e-85 312.4
Bma08g01024 . 7 240 Alfin-like Transcription Factor Family AT5G26210 57.9 4.0e-81 298.1
Bma01g01743 . 4 238 Alfin-like Transcription Factor Family AT5G26210 58.6 2.0e-80 295.8
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT5G26210 70.0 5.4e-78 287.7
Bma04g00716 . 4 223 Alfin-like Transcription Factor Family AT5G26210 55.1 1.7e-63 239.6
Bma01g01801 . 1 203 Alfin-like Transcription Factor Family AT5G26210 57.8 3.7e-63 238.4
Bma11g00599 CCT 1 210 Alfin-like Transcription Factor Family AT5G26210 51.2 1.0e-60 230.3
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT5G26210 65.9 3.0e-52 202.2
Bma01g00252 CCT 3 222 Alfin-like Transcription Factor Family AT3G42790 76.0 2.0e-98 355.5
Bma02g00545 CCT,ECH 3 250 Alfin-like Transcription Factor Family AT3G42790 68.3 1.2e-95 346.3
Bma06g00890 . 3 252 Alfin-like Transcription Factor Family AT3G42790 78.0 6.2e-95 344.0
Bma08g01024 . 7 240 Alfin-like Transcription Factor Family AT3G42790 58.5 7.3e-80 293.9
Bma01g02201 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT3G42790 58.2 1.2e-79 293.1
Bma01g01743 . 6 238 Alfin-like Transcription Factor Family AT3G42790 56.4 7.6e-77 283.9
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT3G42790 67.5 4.9e-76 281.2
Bma04g00716 . 4 223 Alfin-like Transcription Factor Family AT3G42790 52.9 2.6e-61 232.3
Bma01g01801 . 1 203 Alfin-like Transcription Factor Family AT3G42790 55.1 3.4e-61 231.9
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT3G42790 61.3 3.9e-49 191.8
Bma08g01024 . 1 240 Alfin-like Transcription Factor Family AT5G05610 79.7 5.7e-114 407.1
Bma01g01743 . 4 239 Alfin-like Transcription Factor Family AT5G05610 74.3 1.6e-103 372.5
Bma02g00545 CCT,ECH 8 249 Alfin-like Transcription Factor Family AT5G05610 66.4 5.8e-90 327.4
Bma04g00716 . 4 224 Alfin-like Transcription Factor Family AT5G05610 68.9 8.6e-86 313.5
Bma01g01801 . 1 204 Alfin-like Transcription Factor Family AT5G05610 73.7 2.8e-84 308.5
Bma01g00252 CCT 4 222 Alfin-like Transcription Factor Family AT5G05610 60.0 3.1e-83 305.1
Bma06g00890 . 4 252 Alfin-like Transcription Factor Family AT5G05610 57.6 3.2e-80 295.0
Bma01g02201 CCT,ECH 6 240 Alfin-like Transcription Factor Family AT5G05610 55.2 1.1e-72 270.0
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT5G05610 61.1 4.6e-71 264.6
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT5G05610 59.4 1.8e-46 183.0
Bma08g01024 . 43 240 Alfin-like Transcription Factor Family AT3G11200 82.1 2.0e-95 345.5
Bma01g01743 . 42 239 Alfin-like Transcription Factor Family AT3G11200 76.2 2.4e-85 312.0
Bma04g00716 . 4 224 Alfin-like Transcription Factor Family AT3G11200 69.3 1.2e-84 309.7
Bma01g01801 . 1 204 Alfin-like Transcription Factor Family AT3G11200 74.0 3.0e-83 305.1
Bma02g00545 CCT,ECH 44 249 Alfin-like Transcription Factor Family AT3G11200 62.6 8.9e-72 266.9
Bma01g00252 CCT 44 222 Alfin-like Transcription Factor Family AT3G11200 61.1 1.6e-68 256.1
Bma06g00890 . 44 252 Alfin-like Transcription Factor Family AT3G11200 60.3 1.2e-65 246.5
Bma12g00038 . 52 236 Alfin-like Transcription Factor Family AT3G11200 63.2 3.0e-59 225.3
Bma01g02201 CCT,ECH 44 240 Alfin-like Transcription Factor Family AT3G11200 53.5 2.1e-57 219.2
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT3G11200 57.7 6.4e-46 181.0
Bma11g00599 CCT 34 210 Alfin-like Transcription Factor Family AT3G11200 52.0 4.6e-44 174.9
Bma12g00038 . 1 169 Alfin-like Transcription Factor Family AT2G02470 82.2 7.2e-75 277.3
Bma01g00252 CCT 1 146 Alfin-like Transcription Factor Family AT2G02470 78.8 5.7e-64 241.1
Bma06g00890 . 1 155 Alfin-like Transcription Factor Family AT2G02470 74.8 1.1e-62 236.9
Bma02g00545 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 1.4e-62 236.5
Bma08g01024 . 8 153 Alfin-like Transcription Factor Family AT2G02470 67.8 3.2e-54 208.8
Bma01g02201 CCT,ECH 1 145 Alfin-like Transcription Factor Family AT2G02470 66.2 5.6e-51 198.0
Bma01g01743 . 7 154 Alfin-like Transcription Factor Family AT2G02470 63.6 8.1e-50 194.1
Bma04g00716 . 4 116 Alfin-like Transcription Factor Family AT2G02470 69.8 2.2e-39 159.5
Bma06g00890 . 3 153 Alfin-like Transcription Factor Family AT5G20510 79.5 5.8e-69 257.3
Bma02g00545 CCT,ECH 3 164 Alfin-like Transcription Factor Family AT5G20510 72.2 7.1e-67 250.4
Bma01g00252 CCT 3 139 Alfin-like Transcription Factor Family AT5G20510 81.0 3.0e-65 245.0
Bma12g00038 . 3 173 Alfin-like Transcription Factor Family AT5G20510 69.9 1.6e-63 239.2
Bma08g01024 . 7 172 Alfin-like Transcription Factor Family AT5G20510 59.5 1.3e-52 203.0
Bma01g01743 . 6 144 Alfin-like Transcription Factor Family AT5G20510 65.0 1.9e-51 199.1
Bma01g02201 CCT,ECH 1 164 Alfin-like Transcription Factor Family AT5G20510 61.2 3.2e-51 198.4
Bma04g00716 . 4 131 Alfin-like Transcription Factor Family AT5G20510 59.0 5.3e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56883 PF12165 Alfin 1.50E-67 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00545 Bma_Chr02 FPKM 4.389307 5.926064 1.958728 1.521208 0.819757 0.539578 1.182458 0.734601 0.472059 0.410641