Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00548 ATGAGGATTTGGTGTTGCTTATGCTTTACTGCAGGAGAAGACGAAGCGGTAGAGGGAGATAGAGAGATTACCATGAGGAAGGAGGGGGTAGAAAATGAGGGAAATCCTGAGGCTTTTCTTGAAAATGACGATGAATATGGATTAGGGCTTGTTGTTGATAGGCCTGCGCCTGATGAAAGAAGCATGTTGAGAGCGTTTCAGGAGACGGATAGAGCAATGCCAGGTGATGCCGATGGTCATTGTGAAGTGGGTTTAACTTCTCCCGCACTTAACCCTTGGGAGTTTGGCGTGAGCAGTAGTAGTTCAGCTTCAGGTGCAGCGACTCGGGTGGGGGAAAATTGTATTGAGGAGTCTGATCGTGATCCTCACCACAAGCGAGCCAAAGTTCACTCTGATTCTTGTGATTGCTCTTCTGCTTCTGCTTCTGCAATTTCTTCAGATGCTGGAAATGCTTCTTGCATGGATTTGAATTTTGATATTAGTCACGGATCCTCTCTTACATCTAAAACTGAGTGTGTGTATCAATCTTTTACATTGATTAATGCCGGTGGTGATTTTCCTTCTGGCTTCAGCAGTGGGAAAGATGACTCTGAGAGAAAGGACTCTAAAACAGAGGATTTAGAAATTCGGATGGATCTTACGGATGACTTGTTGCACATGGTTTTCTCTTTCTTGAACCACACAAATCTTTGTCGAGCTGCTAGTGTCTGTAGGCAATGGCGAGCGGCTAGTGCACATGAAGATTTTTGGAGTTTCACTCATCTTGCGATCTCTTTTTATACAGAAGTTACTTATATATTGATAAAAAGAGATTTGTTCCTGCCACTTACACATTCATATGTTCATAGAAATCTTGAAGTCTTAACTCTGGGGAAAGGCCTTCTGGGAGACACATTCTTCCATGCCTTAGCAGATTGCCAGACATTGAAGACGTTGAATGTTAATAATTCTACACTTGGTAATGGTATTCAAGAGATTCCGATAAACCATGATCGACTGCGCCATCTTTATCTGACAAAATGTCGAGTCAGATGCATATCTGTCAGGTGCCCACAACTTGAGACATTGTCTTTGAAGCGCAGCAATATGGCACAAGCTATACTTAATTGTCCTCTTTTGCGCGATCTAGATATAGGCTCTTGCCACAAGCTTTCTGATGCTGCAATTCGTTCGGCAGCTATGTCATGTCCTCTATTAGAATCTTTAGATGTGTCAAAATGTTCGTGTATTAGCAACGAAACAATATGTGAAATAGCTCGCCCTTGTTCAAATCTCCATATTTTGAACGCGTCATACTGCCCTCATATATCTTTGGAGTCTGTTAGGCTGCCAATGTTGACAGTACTTAAGCTTCACAGCTGCGAGGGTATTACTTTGGCATCAATGGCTGCAATATCCCGATTTTATATGCTTGAGGTTTTGGAGCTTGACAATTGTAGCCTTCTAACTTCTGTGTCCTTGGACCTTCCATGCTTGCATAGTATTCGCCTCGTTCATTGTCGCAAATTTGCTGATCTGAATTTACGGAGTGTCATGCTCTCATCCATTATGGTGTCTAATTGTCCGGCCCTCCACCGTGTCAACATCACATCAAATGCACTTCAAAAATTAGCATTGCAGAACCTAGAAAGCTTAATTACCTTGGCTCTGCAATGCCCAAGTTTGCAGGAAGTGGACCTCACTGATTGTGAATCTCTCATCTGTGAGGTTTTTGGTGATGATGGTGGGTGCCCTGTGCTGAAGTCATTAGTTCTTGATAATTGTGTGAGTTTGACAGCAGTCCGATTTTGCAGCACCTCCTTAGTTAGTCTTTCTCTTGTCGGTTGTCGGGCCATTACAAGTCTCCAGCTTACATGCCCCATCCTCGAGAGACTGTGTTTAGATGGATGTGATCATCTTGAAATGGCATCATTTTGTCCTGTAAGCAATAATTGTTTATTTGGTTTGCTGATCTCCTACCCATGTATAACTGTGATTTTTGATATTCTCTTTCAGGTTGGTCTAAGATCACTTAATCTGGGTATATGTCCCAAATTGAATGAACTTAGAATTAAAGCCCCTCATATGGCTATACTCGAGCTTAAAGGCTGTGGAGGGTTATCCGAAGCTTCCATTGACTGTCCATTGTTGTCATCACTGGATGCTTCTTTTTGCAGCCTGCTGCGGGATGACTGGTTGTCTGCAACAGCTGCTTCGTGTTTGCAGATCGAGTCTTTAGTATTGATGTCTTGTCGGACTGTTGGTCCAGATGGACTATATTCATTGGGTCGTCTTTCGCGCTTGAACATTCTTGACTTGTCGTATACCTTTTTGATTAACTTAAAGCCGGTCTTTGAGTCTTGTATGCAGCTGAAGGTGTTGAAGTTGCAAGCTTGCAAATACTTAACGGACTCATCTCTGGAACCTCTTTACAAAGAAGGTGCTCTTCCAGCTTTGCGGGAATTGGACTTATCGTATGGGACTTTCCGCCAGTCATCTATGGAGGAGCTTCTCACTTGCTGCACCTATCTCACGCATGTTAGCCTGAATGGCTGTGTGAATATGCATGATCTAAATTGGAGCTTCCATGACAGAAAGCTCTCTGAGTTGTATAGGGTAGACAGCCCCTCTTCTCGGGTTTCTGCTTTGGATGTCGTGGAGCCAACCGAAGGAGCAAATCGCTTACTGCAAAACCTCAACTGTGTTGGCTGTCCAAATATTAGGAAAGTTCTCATTCCCCCATGGGCACGGTGTTTCGACCTGTCATCTCTGAACCTTTCTCTATCTTCCAATTTGAGGGAAGTCGATGTTTCTTGCTTCAATTTGTGCTTTCTCAATTTAAGCAATTGTTGCTCGTTGGAAGTCTTGAGATTGGACTGCCCCAAATTGAGTAGTCTCTTTCTTCAGTCGTGCAACATTGACGAAGAAGATGTTGAAGCTGCCATAGCCAAATGTAGCATGCTCGAGACCTTGGACGTCCGCTTTTGCCCGAAGATTTCCTCGATGAGCATGATTCGAATGCGGATGGCTTGCTTGAGTTTGAAGCGGATCTTCAGCAGTTTGTCACCCATATGA 3054 43.55 MRIWCCLCFTAGEDEAVEGDREITMRKEGVENEGNPEAFLENDDEYGLGLVVDRPAPDERSMLRAFQETDRAMPGDADGHCEVGLTSPALNPWEFGVSSSSSASGAATRVGENCIEESDRDPHHKRAKVHSDSCDCSSASASAISSDAGNASCMDLNFDISHGSSLTSKTECVYQSFTLINAGGDFPSGFSSGKDDSERKDSKTEDLEIRMDLTDDLLHMVFSFLNHTNLCRAASVCRQWRAASAHEDFWSFTHLAISFYTEVTYILIKRDLFLPLTHSYVHRNLEVLTLGKGLLGDTFFHALADCQTLKTLNVNNSTLGNGIQEIPINHDRLRHLYLTKCRVRCISVRCPQLETLSLKRSNMAQAILNCPLLRDLDIGSCHKLSDAAIRSAAMSCPLLESLDVSKCSCISNETICEIARPCSNLHILNASYCPHISLESVRLPMLTVLKLHSCEGITLASMAAISRFYMLEVLELDNCSLLTSVSLDLPCLHSIRLVHCRKFADLNLRSVMLSSIMVSNCPALHRVNITSNALQKLALQNLESLITLALQCPSLQEVDLTDCESLICEVFGDDGGCPVLKSLVLDNCVSLTAVRFCSTSLVSLSLVGCRAITSLQLTCPILERLCLDGCDHLEMASFCPVSNNCLFGLLISYPCITVIFDILFQVGLRSLNLGICPKLNELRIKAPHMAILELKGCGGLSEASIDCPLLSSLDASFCSLLRDDWLSATAASCLQIESLVLMSCRTVGPDGLYSLGRLSRLNILDLSYTFLINLKPVFESCMQLKVLKLQACKYLTDSSLEPLYKEGALPALRELDLSYGTFRQSSMEELLTCCTYLTHVSLNGCVNMHDLNWSFHDRKLSELYRVDSPSSRVSALDVVEPTEGANRLLQNLNCVGCPNIRKVLIPPWARCFDLSSLNLSLSSNLREVDVSCFNLCFLNLSNCCSLEVLRLDCPKLSSLFLQSCNIDEEDVEAAIAKCSMLETLDVRFCPKISSMSMIRMRMACLSLKRIFSSLSPI 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11090189 11096617 + Bma015064.2 Bma02g00548 77798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00548 1017 Gene3D Ribonuclease Inhibitor 440 660 IPR032675 -
Bma02g00548 1017 SUPERFAMILY RNI-like 667 1011 - -
Bma02g00548 1017 PANTHER OS10G0396666 PROTEIN 116 978 - -
Bma02g00548 1017 SMART LRR_CC_2 552 572 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 443 468 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 953 977 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 707 732 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 577 607 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 834 866 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 521 545 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 733 758 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 396 421 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 370 395 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 619 644 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 978 1003 IPR006553 -
Bma02g00548 1017 SMART LRR_CC_2 781 806 IPR006553 -
Bma02g00548 1017 SUPERFAMILY L domain-like 282 636 - -
Bma02g00548 1017 SUPERFAMILY F-box domain 207 266 IPR036047 GO:0005515
Bma02g00548 1017 SMART fbox_2 213 253 IPR001810 GO:0005515
Bma02g00548 1017 Gene3D Ribonuclease Inhibitor 855 1014 IPR032675 -
Bma02g00548 1017 Gene3D Ribonuclease Inhibitor 204 439 IPR032675 -
Bma02g00548 1017 Gene3D Ribonuclease Inhibitor 775 854 IPR032675 -
Bma02g00548 1017 Gene3D Ribonuclease Inhibitor 692 774 IPR032675 -
Bma02g00548 1017 Pfam F-box-like 215 251 IPR001810 GO:0005515
Bma02g00548 1017 PANTHER OS10G0396666 PROTEIN 116 978 IPR044703 GO:0010252|GO:1905393
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00548 - - - qsu:111997858 1236.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00911 Bma02g00548 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00548 Bma-Chr2:11090189 Bma04g00067 Bma-Chr4:595626 1.02E-17 dispersed
Bma01g00911 Bma-Chr1:8832035 Bma02g00548 Bma-Chr2:11090189 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00548 Bma_Chr02 FPKM 11.419913 12.645716 7.265418 8.55671 13.111194 13.52158 14.198171 1.076551 0.718911 0.489441