Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00554 ATGGAGAAGGATATACGTATTAACTACATGTTCACTAGGATTGTAAAGCTTATTGTCGTTGAGCTCTATTGGACGCATGCTGCGGCTTGCATCTTTTACTATTTGGCTACAACTCTTCCTCCTTCAGAAGAAGGGTACACATGGATTGGAAGCTTAAAGTTGGGAGATTACAGTTACTCCAACTTCAGAGATATCGATCTATGGAAACGCTACACAACATCCTTATATTTTGCCATAGTAACCATGGCCACTGTTGGCTATGGAGATATACATGCAGTTAATATGAGGGAAATGATATTTATAATGATATATGTCTCTTTTGACATGATTCTTGGTGCTTATTTGATCGGTAACATGACAGCCTTAATTGTTAAAGGCTCAAAGACTGAAAAGTTCAGAGATAAAACCACAGATCTCATCAAATACATGAATAGAAATAGGCTTGGAAAAGACATCCGCAATCAGATCAAAGGTCATCTACGTTTGCAGTACGAGAGTAGCTACACTGAAGCTGCTGTTCTTCAGGACATTCCCATTTCTATCCGTGCCAAGATTTCTCAAACTTTATATTTGCCTTACATTGAGAATGTTTCACTTTTCAAGGGATGCTCATTTGAGTTCATCAATCAAATAGCTATAAGACTACATGAAGAGTTTTTTCTCCCTGGAGAAGTGATAATGGAACAGGGAAATGTGGTGGATCAACTATATTTTATCTGTCATGGTAAATTGGAGGAACTGGGCATAGGAGAAGATGGATCAGAAGAAGCTGTTTCAGTCCTAAAACCCAACAACTCATTTGGAGAGATTTCTATTCTTTGCAATATTCCTCAACCATATACAGTTCGTGTTAGTGAATTATGTCGGCTTCTGAGGCTTGACAAGCAGTCATTTACAAATATTCTTGATATCTACTTTTATGATGGAAGGAAAATCTTGAACAATCTTCTAGAGGGAAAAGAATCTAGTCTCCGAGTGAAGCAGTTGGAGTCAGATATCACATTTCACATTGGAAAGCAAGAAGCTGAACTTGCTTTAAAGGTGAATAGTGCAGCTTACCATGGAGATTTGTATCAGCTCAAAGGTTTGATCCGAGCAGGAGCTGATCCAAACAAGAAAGATTACGATGGAAGGTCGCCATTGCACCTTGCAGCATCAAGAGGGTACGAGGATATTGCACTTTTTCTGATTCAGGAAGGAGTAGACACCAACATAAAAGAAGCCATAAAAAACGGGCATGATCGAGTTGCGGCTTTACTTGTGAAAGAAGGTGCCTTTTTAAAGATAGATGACGCTGGGAGCTTTCTCTGTACAGCCATTGCAAGGGGGGATTCAGATTTTCTTAAAAGATTATTGGGCAATGGGATTGATCCAAACTCGAGGGATTATGATTATCGAACTCCACTTCATATTGCTGCTTCTGAAGGACTATATCTGATGGCTAAGCTGCTGGTAGAAGCTGGGGCCAGTGTCTTTTCGAAAGACAGATGGGGAAATACCCCTCTGGACGAGTGCCGGACGTGTGGAAACAATAATCTGATCAAACTAATGGAAGAAGCAAAGGCAGTTCAGCTCTCTGCATTTCCTCAACAAACCCAAGAAGTCACTGGTATTTGCTAA 1620 40.06 MEKDIRINYMFTRIVKLIVVELYWTHAAACIFYYLATTLPPSEEGYTWIGSLKLGDYSYSNFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKTTDLIKYMNRNRLGKDIRNQIKGHLRLQYESSYTEAAVLQDIPISIRAKISQTLYLPYIENVSLFKGCSFEFINQIAIRLHEEFFLPGEVIMEQGNVVDQLYFICHGKLEELGIGEDGSEEAVSVLKPNNSFGEISILCNIPQPYTVRVSELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKESSLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLIRAGADPNKKDYDGRSPLHLAASRGYEDIALFLIQEGVDTNIKEAIKNGHDRVAALLVKEGAFLKIDDAGSFLCTAIARGDSDFLKRLLGNGIDPNSRDYDYRTPLHIAASEGLYLMAKLLVEAGASVFSKDRWGNTPLDECRTCGNNNLIKLMEEAKAVQLSAFPQQTQEVTGIC 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11324190 11327487 + Bma015074.2 Bma02g00554 77804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00554 539 PANTHER POTASSIUM CHANNEL SKOR-LIKE 1 535 - -
Bma02g00554 539 SUPERFAMILY Voltage-gated potassium channels 4 159 - -
Bma02g00554 539 SMART cnmp_10 199 317 IPR000595 -
Bma02g00554 539 Pfam Cyclic nucleotide-binding domain 219 303 IPR000595 -
Bma02g00554 539 Gene3D - 337 407 IPR036770 -
Bma02g00554 539 Gene3D - 3 125 - -
Bma02g00554 539 PANTHER POTASSIUM CHANNEL AKT1 1 535 IPR045319 GO:0005249|GO:0006813
Bma02g00554 539 Gene3D Helix hairpin bin 126 186 - -
Bma02g00554 539 Gene3D Jelly Rolls 187 321 IPR014710 -
Bma02g00554 539 ProSiteProfiles Ankyrin repeat profile. 464 496 IPR002110 GO:0005515
Bma02g00554 539 ProSiteProfiles Ankyrin repeat region circular profile. 464 496 - -
Bma02g00554 539 SMART ANK_2a 464 493 IPR002110 GO:0005515
Bma02g00554 539 SMART ANK_2a 497 527 IPR002110 GO:0005515
Bma02g00554 539 SMART ANK_2a 431 460 IPR002110 GO:0005515
Bma02g00554 539 SMART ANK_2a 376 405 IPR002110 GO:0005515
Bma02g00554 539 ProSiteProfiles Ankyrin repeat profile. 376 408 IPR002110 GO:0005515
Bma02g00554 539 Pfam Ankyrin repeats (3 copies) 438 517 IPR002110 GO:0005515
Bma02g00554 539 Pfam Ankyrin repeats (3 copies) 351 428 IPR002110 GO:0005515
Bma02g00554 539 SUPERFAMILY cAMP-binding domain-like 127 317 IPR018490 -
Bma02g00554 539 SUPERFAMILY Ankyrin repeat 350 520 IPR036770 -
Bma02g00554 539 ProSiteProfiles Ankyrin repeat region circular profile. 376 407 - -
Bma02g00554 539 PRINTS EAG/ELK/ERG potassium channel family signature 23 33 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma02g00554 539 PRINTS EAG/ELK/ERG potassium channel family signature 115 124 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma02g00554 539 PRINTS EAG/ELK/ERG potassium channel family signature 71 88 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma02g00554 539 Pfam Ion transport protein 7 124 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma02g00554 539 PRINTS Ankyrin repeat signature 480 494 IPR002110 GO:0005515
Bma02g00554 539 PRINTS Ankyrin repeat signature 377 392 IPR002110 GO:0005515
Bma02g00554 539 CDD CAP_ED 199 313 IPR000595 -
Bma02g00554 539 ProSiteProfiles cAMP/cGMP binding motif profile. 199 319 IPR000595 -
Bma02g00554 539 Gene3D - 408 533 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00554 Bma-Chr2:11324190 Bma08g00105 Bma-Chr8:1237938 0 dispersed
Bma01g01158 Bma-Chr1:12674262 Bma02g00554 Bma-Chr2:11324190 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00554 K21867 - mnt:21409781 941.028