Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00557 ATGCCCTTGGAAGGGATTTTCATTGAACCATCTTCAGCCACAGTTCCTGATCTTTCTCTTCACATTAGCCCTCCAAACACCTCCTCTTCATCAATTTTCAACTCCCAAGCAGATAACAACGTCTTCGATCTTCTCAATCTTCGAAGAAACTCATCAAATTCAAGCAAAAACTCTCTAATAATCGATCCTCGAGCTCACACTGAGCTTTCTCTCGGAAGGAACTTCGAACCTGGAGCTGGCGACCAGCCTAGCAGCGCTTATCAACCAAACAACGTTCACCATTACAATGGGTTGAGGCCAATCAAGGGGATTCCGGTCTATCACAACCGTTCGTTTCCATTCTTACCGATGGACCAAAACGACCCTAAACGTTGCAATTTCTACCACATCCCTACTTACCCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTGTTTCTCTTTCTAATAATTCCCCTTATTTCGGAGGAGGTCTCAATCCAATGGCGATTTTAAACTCCGAGACACATGGGTCATCTACTTCTTACCGATTAGGAGCTTCAGCGAGGTTTAATGGCATCTCGACGCAGTTACACCATCAGTTTCATCATAATCTGAATCAATTTGGCGTTGGACCGTCCGATCAAGGTTCTAATGGGTTGATGAGATCTAGATCTTTGCAGAAATTTCCAGCGAAACGCAGTATGAGAGCTCCTAGGATGAGGTGGACGAGTACTCTTCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGAGGCCATGAAAGAGCTACTCCAAAGTTAGTTCTTGAGCTTATGGATGTCAAAGATCTCACATTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAAACCACTGACAAGCCTGCAGCTTCCTCAGGTAATTCGTATTATGGGTCTGGAGAGGATGATATTTCGCCAATGGGTAATTCAAATGACCATGGCATAAGACAAATTGGAAAAGATCAAGGAGGACCATCCGATAGGTTGGGGCAACAAGATATGGACTATGCTTTCTCCACCCTTTGGTCTAATTCTTCAAGGTAA 1056 43.56 MPLEGIFIEPSSATVPDLSLHISPPNTSSSSIFNSQADNNVFDLLNLRRNSSNSSKNSLIIDPRAHTELSLGRNFEPGAGDQPSSAYQPNNVHHYNGLRPIKGIPVYHNRSFPFLPMDQNDPKRCNFYHIPTYPSPSPSSSSSSSVSLSNNSPYFGGGLNPMAILNSETHGSSTSYRLGASARFNGISTQLHHQFHHNLNQFGVGPSDQGSNGLMRSRSLQKFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKLVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGNSYYGSGEDDISPMGNSNDHGIRQIGKDQGGPSDRLGQQDMDYAFSTLWSNSSR 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11508272 11510254 + Bma015083.1 Bma02g00557 77807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00557 351 MobiDBLite consensus disorder prediction 290 320 - -
Bma02g00557 351 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 74 IPR044847 GO:0000976|GO:0006355|GO:0010158
Bma02g00557 351 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 96 350 IPR044847 GO:0000976|GO:0006355|GO:0010158
Bma02g00557 351 SUPERFAMILY Homeodomain-like 229 285 IPR009057 -
Bma02g00557 351 PANTHER TRANSCRIPTION REPRESSOR KAN1 1 74 - -
Bma02g00557 351 Gene3D - 231 288 - -
Bma02g00557 351 MobiDBLite consensus disorder prediction 290 335 - -
Bma02g00557 351 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 232 285 IPR006447 GO:0003677
Bma02g00557 351 PANTHER TRANSCRIPTION REPRESSOR KAN1 96 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00557 - - - jre:109010652 379.407
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00557 Bma-Chr2:11508272 Bma14g00077 Bma-Chr14:1033789 1.40E-49 dispersed
Bma01g01166 Bma-Chr1:12844871 Bma02g00557 Bma-Chr2:11508272 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g759 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01813 . . . Bma02g00557 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006004 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56884 None None None None Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00557 Bma_Chr02 FPKM 0.973101 0.937155 1.663996 1.516605 1.233366 1.038561 1.401993 1.362851 1.196156 1.50236