Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00560 ATGCCGGAGAATTCCATTCCGAAGGAAGCGGCGTACCAGATAATCAACGACGAGCTGATGCTGGACGGAAATCCGCGGCTGAATCTGGCGTCGTTCGTGACGACGTGGATGGAGCCGGAGTGCGATAAGCTGATAATGTCCGCGATTAACAAGAACTACGTTGACATGGACGAGTATCCGGTGACCACTGAGCTCCAGGCACGTCACTGTTCCTTTTCTCTATTTGACAATCGGTGTGTCAACATGATTGCTCATCTTTTCAATGCGCCGCTTGGAGAGTCCGAGACGGCGATGGGCGTCGGAACGGTGGGGTCGTCGGAGGCCATTATGCTTGCCGGCTTGGCTTTCAAGAGAAAATGGCAGAACAAAATGAAAGCAGCGGGAAAACCCTGTGATAAGCCCAATATCGTCACCGGAGCCAATGTCCAGGTGTGCTGGGAGAAATTTGCAAGATACTTTGAAGTGGAGCTAAAGGAAGTGAAGCTGAGGGAAGGGTACTATGTGATGGACCCAAAGAAAGCTGTGGAGATGGTCGACGAGAACACCATCTGTGTGGCTGCAATTCTCGGTTCTACTCTCAATGGAGAATTTGAAGACGTTAAACTCCTGAATGACCTCTTGACAGAGAAAAACAAGCAAACTGGATGGGACACTCCTATTCATGTAGATGCAGCAAGCGGTGGGTTCATTGCTCCATTTCTTTACCCTGAGCTGGAGTGGGACTTCAGGCTGCCATTGGTGAAAAGCATCAACGTCAGTGGGCATAAATATGGACTTGTTTATGCCGGTATCGGGTGGGTTATTTGGAGGAGCAAGGAGGATTTGCCTGACGAACTCATTTTCCACATCAACTATCTTGGATCTGATCAACCTACTTTCACCCTCAACTTCTCAAAAGGCTCTAGCCAAGTGATTGCTCAGTATTACCAGCTTATTCGTTTGGGATATGAACAGGGATATAGAAACGTCATGGAAAATTGCCAAGAAAACGCAATCATACTAAAAAAAGGATTGGAAAAGACTGGCCGTTTCACCATCGTCTCAAAGGACGAAGGAGTCCCCTTAGTCGCCTTCTCTCTCAAAGACAACAGCTGCCACAACGAGTTTGAGATTTCCGACATGTTGAGGCGCTACGGCTGGATAGTGCCAGCCTACACCATGCCGGCCGATGCACAACACATAACTGTCCTACGAGTCGTAATTCGCGAAGATTTTTCTTGCACACTTGCTGAACGCCTAGTCAGTGATATGGAAAAAGTTCTACACGAACTCGACACCCTTCCTGCCCGAGTGGTGACGACTAAAGTGGAAGCCACGAAAGTAGACGTCCCAGATGAAGTTGTCCCGAAGGATGGGACTGTGACGGTGATTATCAAGAAGAGCAACAAGGAGGTCGAGAAGGAGGTGACGACAATTTGGAAGCAGTTTGTGGCGAATAGGAAGAAGAAGAATGGTGTTTGCTAG 1464 48.5 MPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSAINKNYVDMDEYPVTTELQARHCSFSLFDNRCVNMIAHLFNAPLGESETAMGVGTVGSSEAIMLAGLAFKRKWQNKMKAAGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPKKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPDELIFHINYLGSDQPTFTLNFSKGSSQVIAQYYQLIRLGYEQGYRNVMENCQENAIILKKGLEKTGRFTIVSKDEGVPLVAFSLKDNSCHNEFEISDMLRRYGWIVPAYTMPADAQHITVLRVVIREDFSCTLAERLVSDMEKVLHELDTLPARVVTTKVEATKVDVPDEVVPKDGTVTVIIKKSNKEVEKEVTTIWKQFVANRKKKNGVC 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11649214 11653711 - Bma015089.1 Bma02g00560 77810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00560 487 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 1 424 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bma02g00560 487 PANTHER GLUTAMATE DECARBOXYLASE 1 487 IPR010107 GO:0004351|GO:0006536|GO:0030170
Bma02g00560 487 SUPERFAMILY PLP-dependent transferases 1 424 IPR015424 -
Bma02g00560 487 PANTHER GLUTAMATE DECARBOXYLASE 1 487 - -
Bma02g00560 487 Pfam Pyridoxal-dependent decarboxylase conserved domain 2 361 IPR002129 GO:0016830|GO:0019752|GO:0030170
Bma02g00560 487 Gene3D - 1 34 - -
Bma02g00560 487 Gene3D - 341 428 - -
Bma02g00560 487 Gene3D - 35 340 IPR015421 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01408 Bma-Chr1:22315961 Bma02g00560 Bma-Chr2:11649214 0 dispersed
Bma12g01211 Bma-Chr12:45051671 Bma02g00560 Bma-Chr2:11649214 0 transposed
Bma12g01270 Bma-Chr12:45712232 Bma02g00560 Bma-Chr2:11649214 0 transposed
Bma13g00281 Bma-Chr13:4759971 Bma02g00560 Bma-Chr2:11649214 0 transposed
Bma01g01169 Bma-Chr1:12911966 Bma02g00560 Bma-Chr2:11649214 7.75E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00560 K01580 - pvy:116131519 827.78