Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00561 ATGAATTATGCACGACAGATTGCTCTAGCTGTTGCGGACTATAAGTACTCTTTGAGTGGATTATTACTGCACTCTGAAGAGTATCGTCATAAGTTATCGGAGGTTCATTTACGGTCAGCTGAAAGACTTCTAAAATTATGCCAAACGAATAAAGGTTTCTACGTGAAGGCTGGTCAGTTTGTAGCTGCAATGGGGAAGGTCCCAAAGGAATACTCCTCACTTCTTTCATCATTACAAGATCAGGCAGTTCCTTGTTCGTTCGAAACTATAGAAGAAGTGCTAATCAACAATTTGGGACCTGATTTATCTGAGATATTTTTGTCATTTGAGGAACAACCTGTAGCTGCTGCATCTATTGCTCAAGTTCACCATGCGATTTTGAAAAATCGTCAAGAAGTTGCAGTCAAGGTACAGTATCCTGGATTGGAAAGACAGATGAAAATTGACATAATGACCATGTCTTTCCTTTCAAAAATCATAGCATGGATTTTTCCTGAATTCAGGTTTGATTGGTTGGCATCGGAATTCACAAAGGCCATCCACTCAGAGCTTGATTTTATTCAGGAGGCTAAAAATTCAGAGAAAACCTCAAAAAATTTCAAAAACAACAAAATAGTCAAAGTTCCACTTGTATATTGGGAATGGACGACAAGCAAGGTTCTCATAATGCAGTTTTATAGAGGTTGCAAGGTTGATGACGTGGAATTCATGAAGCAAATGAGAATAAGCCCAAAGAAGGTAGCTAAAATACTGGTTGAAGTCTTTGCAGAAATGATATTCATCCATGGTTTCTTGCACGGAGATCCACACCCTGGTAATATATTAGTCTCTCCAGAAGGTCACGGTGGCTTTTCTTTGGTTCTCTTGGATCATGGCATCTACAGACAGTTTGATGAGGATTTTAGGTTGGATTATTGCCAGCTTTGGAAGGCTTTGATCCTTCTTGATACAAATACAATACAGCAGGTTGGTGAACGGTTTGGTGTTGGGAAATATTCTAGATACTTTCCTCTCATATTCACTGGAAGAACTATTGATAGTAAATCTGCTTTTGGGAGTGGAATGTCCATTGAAGAGAAAAAGAATTTGAAAGAGGAGGTAAAATTATTAAAGATGGAGGATATATTTTCATTCATGGAGACTCTACCCCCTGACTTACTCACTATAATGCGTACTGATGGATTACTGAGCTCTATCATAAGAAAGTTGGGGGCTTCACAAACTCTTAGGATGCTAACTTATGCCAAATACGCATTACATGGCCTTTCTCTAAACTTGAATCATGAAAGTGGTAAAAACTTTGTATAA 1308 38.3 MNYARQIALAVADYKYSLSGLLLHSEEYRHKLSEVHLRSAERLLKLCQTNKGFYVKAGQFVAAMGKVPKEYSSLLSSLQDQAVPCSFETIEEVLINNLGPDLSEIFLSFEEQPVAAASIAQVHHAILKNRQEVAVKVQYPGLERQMKIDIMTMSFLSKIIAWIFPEFRFDWLASEFTKAIHSELDFIQEAKNSEKTSKNFKNNKIVKVPLVYWEWTTSKVLIMQFYRGCKVDDVEFMKQMRISPKKVAKILVEVFAEMIFIHGFLHGDPHPGNILVSPEGHGGFSLVLLDHGIYRQFDEDFRLDYCQLWKALILLDTNTIQQVGERFGVGKYSRYFPLIFTGRTIDSKSAFGSGMSIEEKKNLKEEVKLLKMEDIFSFMETLPPDLLTIMRTDGLLSSIIRKLGASQTLRMLTYAKYALHGLSLNLNHESGKNFV 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11674754 11679679 + Bma015090.1 Bma02g00561 77811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00561 435 CDD ADCK1-like 77 328 IPR045307 -
Bma02g00561 435 Pfam ABC1 atypical kinase-like domain 77 323 IPR004147 -
Bma02g00561 435 Gene3D Transferase(Phosphotransferase) domain 1 172 309 - -
Bma02g00561 435 SUPERFAMILY Protein kinase-like (PK-like) 79 310 IPR011009 -
Bma02g00561 435 PANTHER ABC1 FAMILY PROTEIN 7 427 - -
Bma02g00561 435 PANTHER AARF DOMAIN CONTAINING KINASE 1 (PREDICTED) 7 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00561 K08869 ADCK, ABC1; aarF domain-containing kinase - nnu:104611037 621.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00561 Bma-Chr2:11674754 Bma08g01084 Bma-Chr8:49874306 5.04E-67 dispersed
Bma02g00561 Bma-Chr2:11674754 Bma01g02436 Bma-Chr1:82007053 2.01E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g719 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01815 Bpe14g00064 . . Bma02g00561 . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00766 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007859 1 6 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00561 Bma_Chr02 FPKM 0.17987 0.522549 1.702904 1.558782 31.252102 35.452339 28.318014 0.0 0.0 0.0