Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00562 ATGGCGTTCGAAAAGATCAAAGTCGCCAATCCTATAGTCGAGATGGACGGTGCGATTGTTACTTCCTTGCTTTGTAATATTCTTGGCAATCTGCAGCTTATTTTCCCTTTTCTAGAGTTGGACATCAAATACTTTGATCTTGGCCTGCTGAACCGTGACGAAACAGATGATAAAGTTACGGTAGAAAGCGCAGAGGCTACTCTAAAGTATGTGTATAATGTAGCCATCAAATGTGCAACTATCACTCCAGATGAAGGACGTGTGAAGGAATTTAACTTGAAGCAGATGTGGAGAAGTCCAAATGGGACAATCAGGAATATTTTGAACGGAACTGTCTTCAGAGAACCGATTCTTTGTAAAAATGTACCCCGTCTTGTTCCAGGCTGGACTAAACCAATTTGCATTGGAAGGCATGCATTTGGAGATCAATATCGAGCCACTGATACAGTCATCAAAGGAGCTGGGACATTGAAGCTTGTGTTTGGTCATTTAATGTTTGCAGTCTCGGAAGGAGGAAAACAAAACGAGTTAGAAGTTTATAAATTTACAGGTGCCGGAGGAGTAGGATTATCCATGTATAACACCGATGAGTCCATTTGTGCTTTTGCAGAGGCATCTATGAACACTGCTTATCAGAAAAAGTGGCCTCTTTACCTTAGTACTAAAAATACTATTCTGAAGAAGTATGATGGGAGATTCAAGGATATTTTTCAAGAAGTCTACGAGTTAAACTGGAAGTCAAAGTATGAGGAAGCTGGCATATGGTATGAGCACCGTCTCATCGACGATATGGTGGCCTATGCTTTAAAGAGTGAAGGAGGTTATGTTTGGGCATGCAAAAACTACGATGGAGATGTTCAGAGTGATTTCTTAGCTCAAGGGTTTGGATCACTTGGATTGATGACGTCTGTACTGATGTGCCCGGATGGGAAAACTATCGAAGCAGAAGCAGCCCATGGCACAGTCACGAGGCACTTCAGGGTTCACCAGAAAGGAGGCGAAACAAGCACGAATAGTATAGCCTCCATTTTTGCTTGGTCACGTGGTCTTAAGCACAGGGCAAAGCTTGATGACAATGCGAGACTCCTTGATTTTACTGAGAAACTGGAAGCAGCTTGTATTGGAGTAGTGGAATCTGGGAAAATGACCAAGGATCTTGCTCTTCTCAGCCATGGATCTAAGGTTACTAGGAATCAGTATTTGAACACGGAAGAGTTTATTGATGCTGTGGCAGAGGATTTGAAAGCAAGACTTGCTCTCAAGGCGGTATAA 1272 42.53 MAFEKIKVANPIVEMDGAIVTSLLCNILGNLQLIFPFLELDIKYFDLGLLNRDETDDKVTVESAEATLKYVYNVAIKCATITPDEGRVKEFNLKQMWRSPNGTIRNILNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGTLKLVFGHLMFAVSEGGKQNELEVYKFTGAGGVGLSMYNTDESICAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYELNWKSKYEEAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLMCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWSRGLKHRAKLDDNARLLDFTEKLEAACIGVVESGKMTKDLALLSHGSKVTRNQYLNTEEFIDAVAEDLKARLALKAV 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11681493 11685369 - Bma015091.2 Bma02g00562 77812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00562 423 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 1 422 IPR004790 GO:0004450|GO:0006102
Bma02g00562 423 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 281 300 IPR019818 GO:0000287|GO:0016616|GO:0051287
Bma02g00562 423 SMART Iso_dh_2 11 410 IPR024084 -
Bma02g00562 423 PIRSF IDH_NADP 1 421 IPR004790 GO:0004450|GO:0006102
Bma02g00562 423 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 1 422 - -
Bma02g00562 423 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 418 - -
Bma02g00562 423 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 5 418 IPR004790 GO:0004450|GO:0006102
Bma02g00562 423 Pfam Isocitrate/isopropylmalate dehydrogenase 7 410 IPR024084 -
Bma02g00562 423 Gene3D Isopropylmalate Dehydrogenase 3 422 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00562 K00031 IDH1, IDH2, icd; isocitrate dehydrogenase [EC:1.1.1.42] - pop:7468338 728.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00562 Bma-Chr2:11681493 Bma14g01505 Bma-Chr14:30336712 0 dispersed
Bma14g01487 Bma-Chr14:30104991 Bma02g00562 Bma-Chr2:11681493 0 transposed
Bma01g01170 Bma-Chr1:12921815 Bma02g00562 Bma-Chr2:11681493 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g717 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00846 Cam01g0871 Cec01g0869 Cco01g0897 Clacu01g0860 Cmu01g0828 Cre09g1682 . . . . . . . . . . . . Bpe14g00063 . . Bma02g00562 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001183 3 5 3 4 3 2 4 2 2 1 2 2 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 3 5 3 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00562 Bma_Chr02 FPKM 0.0 0.0 0.0 0.0 10.291177 11.587379 11.558153 0.0 0.0 0.0