Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00574 ATGGCACAGCAGTCTACCCGTCTTCATCGCCTCCTCACGCTTCTGGACACTGGTTCAACCCAAACAACGAGATTTACTGCCGCTCGTCAGCTGGGGGAAATTGTGAAATCCAATCCTCAAGACTTAAATTCTCTGTTGAAAAAGGTGGTTTCTATTTATCTACGGAGTAAAAGTTGGGATACAAGGGTCGCTGCTGCCCATGCTATTGGGGCTATTGCTCAGAATGTTAAACACACATCTTTGGCTGAGCTTTTGGCCAGTGTTGAAGTGAAGATATCTGAGGCTGGAATCTCTAGTACTGTTGAAGATGTGCTGGCGTTACCCGATTTTCGTCCGTCATTCACTAGTTTTGATATCAATAAGGTGCTCGAATTTGGTGCTCTATTGGCATCAGGGGGACAGGAATATGATATCGCAAACGATAAGGTGAAAAATCCAAAGGAACGATTGGCTCGCCAAAAACAAAATCTCCGACGTCGATTGGGTTTGGACGTGTGTGAGCAATTCATGGATGTAAATGACATGATAAAAGACGAAGACCTATTCCTTCAAAAATATGATTCACATGGTAGGGGGCCAAATGCAAAAATATACTCATCGGTTTCTGCCCATAATATTCAGCAAGTGTCCTTTGATGTTGATAATGATGAAGATAGCATTATTGACCCTGATGGCGACGGGCAGTGGCCTTTTCATAATTTTGTTGAGCTACTCCTTATTGATATGTTTGATCCTGTTTGGGAGGTCCGACATGGTAGTGTGATGGCTTTGAGAGAAGTTTTAACTCACCAAGGCGCTTGTGCTGGAGTGTTTATGCCTGACTTGGATGGTGCTTCATTTTCTGAAGACCAAAGCATATCAAAGACAGTGAATAAAGATAGTGAGATTGATTTGAACCTGCAACTTCCCGAGGATGAGTTTGAGCCTAGATGTAAAAAAACAAAGTATGAAGATGGAATGTCTCCAACTATGGATGTGATGGTTTCTTCTGCCAAAGAGCCTAAATTGGAGATCACTGCAAAGGTTGAAGGTGAGGAGTGGGATTTCTCTAGTCATGCTAATGGTGAAGTGGAGAAATTGTCTGTTAAGATAGAGCCGGAATCATACCTGAATGGATTGTGTGAAGAAACTTCTGGGTCATTGGAGACAAAGGACCCCTCAAATTTCTCCTTTGCAGAACCTATTGTGCAGAAAATTCATCCGGAAAATTCAGACCTGATGACCTTAGTTAAATTGGCTAGGCACTCATGGCTTCAAAATACTGAATTTCTCCAAGACTGCGCAATCCGTTTCTTATGTATATTGTCATTGGATCGATTTGGTGATTTTGTGTCAGATCAGGTTGTTGCTCCAGTGCGGGAAACTTGTGCACAAGCATTGGGTGCAGTGTTTAAGTTCATGCATCCCTCATTAGTTAATGAAACATTAAATGTCTTGCTGAAAATGCAGTGTCGAACAGAATGGGAAATTCGCCATGGTAGTCTTTTGGGTGTAAAATATTTGGTTGCTGTTCGACAGGAGATGCTTCATTACTTGCTTTGTCACATTCTTCCTGCATGTAAAGCTGGGCTTGAAGACCCTGATGATGATGTTCAAGCAGTAGCTGCAGATGCTCTGATACCTGCTGCAGCGGCTATTGTTGCTCTCAAGGGGCCAACCTTGCATTCAATCGTGATGCTACTTTGGGATATACTACTTGATTTGGATGATTTGAGTCCATCTACCAGCAGCGTAATGAATTTGTTGGCAGAAATATATTCCCAGGAAGAAATGCTGGAGGCATTGAAATTGAATGAAGCTCAAGAGTATGATTTAAGTAAAGTTAGCCATCCTAAAGAAGGAATTACTTTACAGGAAAATCCTTATATGCTATCCACTTTAGCACCTCGGTTATGGCCATTTATGAGGCATAGTATCTCATCAGTTCGCCATTCTGCCATCCGTACTCTGGAGCGGTTGCTTGAATCTGGATTGAAAAGGAATATTTATAACACTGCCACTACAATGTGGCCATCGTTTATTATAGGTGATACCTTTAGAATTGTTTTTCAAAATTTACTGCTGGAATCAAATGGAGATATTTTGCTGTGTTCAGAAAGAGTTTGGAGGCTACTTATTCAGTGCCCATTGGAGGACTTGGGACTTGTGGCGAGGTTGTATATTTCTTCCTGGATAGAACTTGCAACAACATCATATGGTTCGGCCTATGATGCTACAAAAATGTTTTGGCCTATAGCTGTACCTCGAACAAGTCATGTTAGAGCTGCTGCTAAAATAAGAGCTGCAAAGCTTGAGAATGAGTGTAATAGTGTTGTTAGCTTGGAATCTTTGAAAGGGGCTGCTCTAAATGAAAGCATTGGAGGTGCTTCTGCAAACTCAGTAAAGATTGTAGTTGGTGCTGATGCAGAAATGTCAGTTACTCATACCCGAGTTGTTACTGCCACTGCTCTGGGAATGTTTGTTTCCAGGTTGCCTGAGGGGTTCATTCAATATGTAATTGATCCACTGTGGAATGCCCTTACATCTTTTTCCGGTGTTAAACGCCAGGTGGCATCTATGGTCCTTATTTCTTGTTTTAAGGAAATTAAATGTGGTGAATGCTGTGGAGTTATGTTGGGGCTCCCCAATAACATAAAAGAGTGGTTGTTGGATTTGTTAGCATGCACTGATCCTACATTTCCAACAAAAGGCTCTCTACTTCCTTATGATGAACTTTCACGGACATATTCTAAGATGCGCAGTGAGGCTTTTCAGTTGCTGAGTGTTATTCAGTCATTTGGCATGTCAAGCGATTTTGCATCAGCTTTTGACTTGGAAAGTTTGAGTGCTGATGATGCGATCAGTTTTGCCTCAAAAATCTCACTGCTCAAGGATAATGAGGGGAACACTGTTGAGGATGTAGAGTCATCTAAACAACGCCTTATGACAACTTCTGGCTATTTAAAATGTGTCCAGTTACCTAATCTGTGTCTAATTTTGGTTACTATTTTTCTTTTTGTGTCAACTTGTATTCAATTCTTTAGTAATTTGCATGTTACTGTCACTACCTTAATTGCTGCTGCAGTTGTGTGGATGTCGGAGCTTCCTACTAGACTTAATCCAATTATACTGCCCCTGATGGCTTCGATCAAAAGAGAACAGGAGGAAATAATGCAGCAAAAAGCATCTGAGGCGCTTGCAGAGCTCATTTATAACTGTGTTTCGCGTAAACCTGGGCCGAACGATAAGTTAATAAAAAATATCTGTAGTTTAACTTGTGTTGATCCTTGTGAGACACCTCAGGCTGGATTAATTAGTTCGATGGAGATTATTGATGATCAAGATCTTCTCTCCTTCGGGACTCATTGCGGGAAACAAAAGGCGAAGATTCACATGTTATCTGGTGGTGAAGATCGATCGAAAGTTGAGGGCTTTATCAGTAGACGAGGATCTGAACTTGCATTGAGGCATCTTTGCCAGAAGTTCGGAGCCTCTTTATTTGAGAAACTCCCAAAATTATGGGATTGCCTTACCGAAGTACTTGCGCCTTGCAGTAGCAAGAGTTCTATAGAAGCTGGTGTCCAGATATCACCAGCCATTGAATTTGCTAAGGATCCTCAGATCTTGATTAATAACATCCAGGTTGTACGTTCTATAGGTCCTTTGCTTAACGAGACATTGCAACCAAAACTACTCACTCTTCTCCCGTGCATTTTTCAATGTGTTCGCCATTCTCATATTGCTGTTAGATTGGCAGCTTCAAGGTGCATAACTTCCATGGCTAAGCCAATGATGCAACATGTCATGCAAGCTGTAATAGAAAATGCAATCCCAATGTTAGCAGATATGAGTTCTGTTCATTCTAGACAAGGTGCTGGCATGCTTATTAGCTTGCTTGTTCAAAGTTTAGGTGTTGATCTGGTGCCTTATGCTCCATTATTAGTTGTGCCTCTTCTGAGGTGTATGAGTGATTGTGATCACTCTGTGAGGCAGAGTGTGACACATAGTTTTGCTGCCCTTGTGCCTCTTCTTCCATTAGCACGAGGAGTTCCCCCACCTAATGGATTGAATGAAAGCTTCTCTAAGAATGCAGAAGATGCCCAGTTTCTGGAACAATTGCTTGATAACTCCCACATTGATGATTATAAGCTCTGTACAGAACTTAAAGTGACCTTAAGAAGATATCAGCAAGAAGGGATAAATTGGTTGGCATTTTTAAAACGTTTCAAGCTTCATGGAATCTTGTGTGACGATATGGGACTTGGTAAGACACTTCAAGCATCCACAATAGTGGCCTGTGACATTGTCGAGCACCGCTCCTTAAATGATAGGGACAATATTTCACCTTCTTTGATTATTTGCCCATCAACTCTAGTTGCGCATTGGGCCTTTGAGATAGAGAAATACATTGACGGGTCCATTATGTCGACACTTCAATATGTTGGTTCAACATCAGAGCGAATATCACTTCAGGCACATTTTAGCAAGCATAATGTCGTCATAACATCATATGATGTTGTCCGCAAAGATATTGAATATCTTGTGCAGCACCACTGGAATTATTGCATATTAGATGAAGGACACATAATAAAGAATGCAAAATCTAAAATCACACTTTCAGTGAAACAGTTGAAAGCTCAGCATCGTTTGATACTGAGTGGAACACCAATCCAGGTTAGTTACGAGTGGAAAAAATCTCTTAACAATCGATCTGTTGTTGGTGCTAAAATCCTTTATCTATTTCTGCAGAACAACATCATGGACTTGTGGTCTCTTTTTGATTTTCTAATGCCAGGGTTTCTTGGAACAGAAAGACAGTTTCATACGAGGTATGGAAAACCACTGGTAGCAGCTAGAGATTCTAAATGCTCTGCAAAGGATGCTGAAGCTGGTGCGCTGGCCATGGAAGCTCTACACAAGCAGGTTATGCCATTTCTTCTCCGTCGAACAAAAGATGAAGTATTATCTGATCTTCCAGAAAAAATAATTCAGGACAGATACTGCGATTTGAGTTATGTTCAGCTGAAATTGTATGAACAGTTTTCTGGTTCACCTGTTAAACAAGAAATTTCAGGTATAGTTAAACTAAATGAGTCAACAGAGACCAGTGAAGACAAAGGGGTTACGTCCAAGGCATCTACTCATGTTTTTCAGGCACTTCAGTATTTGCTAAAACTTTGCAGTCATCCTTTGCTTGTTGTGGGCGAAAGAATTCCAGACTCCTTATCATCCATCTTGGTGGAGCTCTTTCCTACAAGTTCTGATATTGTTTCGGAGCTTCACAAACTACACCACTCTCCGAAGTTAGTTGCTCTCCAGGAGATTCTGGAAGAGTGTGGAATTGGTGTTGATTTTTCAAGTTCTGATGGGGCTGTTAGCGTTGGACAGCATAGAGTCTTAATATTTGCTCAGCATAAAGCTTTCTTGGACATTATAGAGAAGGATTTGTTTCAAACTCATATGAAGAATGTTACATTTTTGCGGTTGGATGGATCGGTCGAGCCAGCAAAACGATTTGAAATTGTTAAAGCCTTCAATTCTGACCCCACAATTGATGTTCTGCTCCTTACTACTCATGTTGGGGGTCTTGGTTTGAATCTGACATCTGCTGACACACTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGATCACCAGGCAATGGACAGAGCACATAGATTAGGTCAGCAGAAAGTAGTGAATGTTCATCGACTCATAATGCGGGGCACCCTGGAAGAGAAAGTCATGAGCCTCCAAAAGTTTAAACTTTCCATTGCAAACGCCGTCATCAACTCAGAAAATGCCAGTATGAAAACAATGAATACTGATCAATTGCTCGATCTCTTTGCATCTGCAGATACCTATAAAAAGGGTGGATCATCATCGAACCGCACTGACAGTATCGTTGAGGGGGAGGGAAAAATGGTAGGTGGGGGAAAGGGGTTGAAAGCCATACTTGGTGGATTGGAGGAGCTGTGGGATCAGTCACAATACACTGAGGAGTACAACGTTAACCAGTTTTTGGCGAAGCTCAACGGCTAG 6024 41.45 MAQQSTRLHRLLTLLDTGSTQTTRFTAARQLGEIVKSNPQDLNSLLKKVVSIYLRSKSWDTRVAAAHAIGAIAQNVKHTSLAELLASVEVKISEAGISSTVEDVLALPDFRPSFTSFDINKVLEFGALLASGGQEYDIANDKVKNPKERLARQKQNLRRRLGLDVCEQFMDVNDMIKDEDLFLQKYDSHGRGPNAKIYSSVSAHNIQQVSFDVDNDEDSIIDPDGDGQWPFHNFVELLLIDMFDPVWEVRHGSVMALREVLTHQGACAGVFMPDLDGASFSEDQSISKTVNKDSEIDLNLQLPEDEFEPRCKKTKYEDGMSPTMDVMVSSAKEPKLEITAKVEGEEWDFSSHANGEVEKLSVKIEPESYLNGLCEETSGSLETKDPSNFSFAEPIVQKIHPENSDLMTLVKLARHSWLQNTEFLQDCAIRFLCILSLDRFGDFVSDQVVAPVRETCAQALGAVFKFMHPSLVNETLNVLLKMQCRTEWEIRHGSLLGVKYLVAVRQEMLHYLLCHILPACKAGLEDPDDDVQAVAADALIPAAAAIVALKGPTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMLEALKLNEAQEYDLSKVSHPKEGITLQENPYMLSTLAPRLWPFMRHSISSVRHSAIRTLERLLESGLKRNIYNTATTMWPSFIIGDTFRIVFQNLLLESNGDILLCSERVWRLLIQCPLEDLGLVARLYISSWIELATTSYGSAYDATKMFWPIAVPRTSHVRAAAKIRAAKLENECNSVVSLESLKGAALNESIGGASANSVKIVVGADAEMSVTHTRVVTATALGMFVSRLPEGFIQYVIDPLWNALTSFSGVKRQVASMVLISCFKEIKCGECCGVMLGLPNNIKEWLLDLLACTDPTFPTKGSLLPYDELSRTYSKMRSEAFQLLSVIQSFGMSSDFASAFDLESLSADDAISFASKISLLKDNEGNTVEDVESSKQRLMTTSGYLKCVQLPNLCLILVTIFLFVSTCIQFFSNLHVTVTTLIAAAVVWMSELPTRLNPIILPLMASIKREQEEIMQQKASEALAELIYNCVSRKPGPNDKLIKNICSLTCVDPCETPQAGLISSMEIIDDQDLLSFGTHCGKQKAKIHMLSGGEDRSKVEGFISRRGSELALRHLCQKFGASLFEKLPKLWDCLTEVLAPCSSKSSIEAGVQISPAIEFAKDPQILINNIQVVRSIGPLLNETLQPKLLTLLPCIFQCVRHSHIAVRLAASRCITSMAKPMMQHVMQAVIENAIPMLADMSSVHSRQGAGMLISLLVQSLGVDLVPYAPLLVVPLLRCMSDCDHSVRQSVTHSFAALVPLLPLARGVPPPNGLNESFSKNAEDAQFLEQLLDNSHIDDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASTIVACDIVEHRSLNDRDNISPSLIICPSTLVAHWAFEIEKYIDGSIMSTLQYVGSTSERISLQAHFSKHNVVITSYDVVRKDIEYLVQHHWNYCILDEGHIIKNAKSKITLSVKQLKAQHRLILSGTPIQVSYEWKKSLNNRSVVGAKILYLFLQNNIMDLWSLFDFLMPGFLGTERQFHTRYGKPLVAARDSKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSYVQLKLYEQFSGSPVKQEISGIVKLNESTETSEDKGVTSKASTHVFQALQYLLKLCSHPLLVVGERIPDSLSSILVELFPTSSDIVSELHKLHHSPKLVALQEILEECGIGVDFSSSDGAVSVGQHRVLIFAQHKAFLDIIEKDLFQTHMKNVTFLRLDGSVEPAKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQQKVVNVHRLIMRGTLEEKVMSLQKFKLSIANAVINSENASMKTMNTDQLLDLFASADTYKKGGSSSNRTDSIVEGEGKMVGGGKGLKAILGGLEELWDQSQYTEEYNVNQFLAKLNG 2007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12203293 12220725 - Bma015107.1 Bma02g00574 77824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00574 2007 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1397 1567 IPR014001 -
Bma02g00574 2007 SMART helicmild6 1803 1889 IPR001650 -
Bma02g00574 2007 Gene3D - 2 288 IPR011989 -
Bma02g00574 2007 Gene3D - 1354 1641 IPR038718 -
Bma02g00574 2007 SUPERFAMILY ARM repeat 8 1427 IPR016024 -
Bma02g00574 2007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1643 1945 IPR027417 -
Bma02g00574 2007 SMART ultradead3 1381 1577 IPR014001 -
Bma02g00574 2007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1363 1642 IPR027417 -
Bma02g00574 2007 Gene3D - 1652 1967 IPR027417 -
Bma02g00574 2007 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1780 1935 IPR001650 -
Bma02g00574 2007 CDD SF2_C_SNF 1758 1900 - -
Bma02g00574 2007 CDD DEXHc_Mot1 1385 1642 IPR044078 GO:0005524
Bma02g00574 2007 Pfam SNF2-related domain 1404 1725 IPR000330 GO:0005524|GO:0140658
Bma02g00574 2007 Gene3D - 1017 1343 IPR011989 -
Bma02g00574 2007 Pfam Domain of unknown function (DUF3535) 701 1169 IPR022707 -
Bma02g00574 2007 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1552 IPR044972 GO:0003677|GO:0016887|GO:0017025
Bma02g00574 2007 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1575 1939 IPR044972 GO:0003677|GO:0016887|GO:0017025
Bma02g00574 2007 Pfam Helicase conserved C-terminal domain 1788 1889 IPR001650 -
Bma02g00574 2007 Gene3D - 428 656 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00574 K15192 BTAF1, MOT1; TATA-binding protein-associated factor [EC:5.6.2.-] - tcc:18599740 2664.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00574 Bma-Chr2:12203293 Bma09g00440 Bma-Chr9:38289177 3.96E-68 dispersed
Bma02g00574 Bma-Chr2:12203293 Bma06g00128 Bma-Chr6:1722979 5.92E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g633 . . . . . . . . . Cmo12g00333 . . . . Sed11g1121 . . Bhi04g00082 Tan02g2793 Cmetu03g1615 . Hepe10g0196 . Lcy13g1870 . . . . . . . . Cone7ag1636 . . . . . Cme03g01550 . . Bda01g01358 Bda13g01838 . . . Bma02g00574 . . . . Cma12g00381 . . . . . . . . . . . . . . . . . . Lsi08g01270 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009903 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56886 PF12054 DUF3535 2.90E-84 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00574 Bma_Chr02 FPKM 0.378641 0.0 8.278115 8.243405 0.0 0.0 0.118209 7.524009 11.61869 12.313201